Oard005079.2
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- -
- Assembly
- GCA_943138245.1
- Location
- CALPBP010000136.1:31256-33056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00072 0.13 14.3 5.0 1 23 112 134 112 134 0.98 2 14 0.021 3.8 9.7 2.8 1 23 195 217 195 217 0.95 3 14 7.9e-07 0.00015 23.6 2.5 1 23 220 242 220 242 0.98 4 14 0.00064 0.12 14.5 4.0 1 23 255 277 255 277 0.99 5 14 3.7e-06 0.00068 21.5 0.6 1 23 280 303 280 303 0.96 6 14 0.0031 0.56 12.4 1.9 2 23 321 342 321 342 0.97 7 14 0.00053 0.096 14.8 1.2 2 23 348 370 347 370 0.92 8 14 2.7e-05 0.0049 18.8 0.8 3 23 378 398 376 398 0.96 9 14 3.2e-05 0.0059 18.6 0.3 1 23 404 426 404 426 0.98 10 14 3.4e-06 0.00063 21.6 2.1 1 23 432 454 432 454 0.97 11 14 2.6e-06 0.00048 22.0 0.1 1 23 460 482 460 482 0.97 12 14 0.00022 0.041 15.9 2.6 1 23 488 510 488 510 0.96 13 14 3.3e-07 6e-05 24.8 0.4 1 23 516 538 516 538 0.97 14 14 0.00022 0.041 16.0 4.9 1 23 544 566 544 566 0.98
Sequence Information
- Coding Sequence
- ATGGCTATTTCAACAAATAAGTGCAGAATTTGTTTAGTGGAAAcacaaaatttgaaacttttatctGCAGATTATTTAGTCAACGGAGAAACCCTACAAATATCAGATATTATAACTTCATGTACAAATATTCAGATTATATTTGATGACCGATTTCCGAATTACATATGCGACAATTGTCTGCAAGATGCCAATACGGCATATTTGTTTAAAAGACGATGTGAACAatcagaaaattatttaaaatcacAGTTAGAAGTCTTGAAAAATCACTGCAATGAACAGCAAACAGAACTAGATAAAGATGTATCTactcataataaaaataagaaatacaagtgtaatttttgtaatgaattttttaataatgaaaatagtttAAACAATCATAGGCATAGTCATACAACAAATACTTTACGAGCAATGAGGAAAAGTAATAAAAAGATTGTCGTTTATGATTCAGAAGAATCAAGagataattttgatgattacAACAATTCAGAAGATGAAACAATTGTTGAAGATAAAACAAAATGGCGACAAATACTCCAAAACGAAAAGGAAAAGAACGAAAATGGTTTTTATGTTTGTTTGTGTTGTCCACAACAATTTACTCATGTGAAAGATTTAAAAGTTCATATCAACTCGCATACGTCATTCCAGTGCAAGATATGTCCAAAAAAATTCACCCTATTATCAAATTTACGTCGGCATTACAAGCTACACGatacaacaaatacaaatttcaaaaataacacTGAATACAAATGTGTTTCTTGCGAGAAAATCTTCCACAGACGAAAACAGTTAAGTGAACACTTAAAAACTCATGAAGATTTTACGTGCCCAATATGTAACGCCAAGTTTTCATACGCTACAAATTTACGAAAACACGTAAAATGGCAACACCGACCGAAAGATGAAATTAGGGTTATGAAACAGATTCCGTTACAACAAAGAACTTGTGATGTATGtttgaaaacttttaaatacaGAGTTAGTATGTTGAAACATAGAAAATTAcatgattttaatggaaaaatgTGCAAGTATtgtgatgaaatatttgaaaacgcGATGAAATTACATCGACACATGGATGAAAACCATGAAAatgagaagaaaataatttgtaaaatatgtgGAAAGAAGTTCTTCTTTGATAGAAATTTACGGATGCATATGAATGTGCATACGGGCGACAAACCATACATGTGCGAAATATGTGGTCATAGTTTTGCTCTCGCTGGAAATTTAAGTGTTCATAAACGTCTACACACAGGGCTTCGCCCTTATAAATGCCTAATCTGCCACCGAACCTTCACGCAACAATCTGCTTTACGCAGCCACGAAGCCTCCCACTCTTCCAGTCGAGACCACGTCTGCCCGGACTGCGGGGCCGCTTTCTCCCGAGCGGGGGCTCTGCGCAACCACCGCGCTAGACACATTGGGGCCCGCTTGCACGCCTGCACTCTCTGCCCGAGGCGGTTTACGTTCAGCGCGGAGCGAAAACGACATATGCTCACGCATACGGGCGAAAAGACACATATGTGTACTGTGTGTGGCAAGGCCTTTAACAGGGGGGCCAATTTGAATGTGCATATGAGGATACACACGGGGGATCTGCCCCACAAGTGTGAAGTATGTGGGAAAGGGTTCGCGCAGAAACAGTGCATGAAAATGCACAGAAATACGCATAAAGATATGGAGAATCATTTGCAAGTTATTGTACCAGatttgtaa
- Protein Sequence
- MAISTNKCRICLVETQNLKLLSADYLVNGETLQISDIITSCTNIQIIFDDRFPNYICDNCLQDANTAYLFKRRCEQSENYLKSQLEVLKNHCNEQQTELDKDVSTHNKNKKYKCNFCNEFFNNENSLNNHRHSHTTNTLRAMRKSNKKIVVYDSEESRDNFDDYNNSEDETIVEDKTKWRQILQNEKEKNENGFYVCLCCPQQFTHVKDLKVHINSHTSFQCKICPKKFTLLSNLRRHYKLHDTTNTNFKNNTEYKCVSCEKIFHRRKQLSEHLKTHEDFTCPICNAKFSYATNLRKHVKWQHRPKDEIRVMKQIPLQQRTCDVCLKTFKYRVSMLKHRKLHDFNGKMCKYCDEIFENAMKLHRHMDENHENEKKIICKICGKKFFFDRNLRMHMNVHTGDKPYMCEICGHSFALAGNLSVHKRLHTGLRPYKCLICHRTFTQQSALRSHEASHSSSRDHVCPDCGAAFSRAGALRNHRARHIGARLHACTLCPRRFTFSAERKRHMLTHTGEKTHMCTVCGKAFNRGANLNVHMRIHTGDLPHKCEVCGKGFAQKQCMKMHRNTHKDMENHLQVIVPDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767428;
- 90% Identity
- iTF_00769028;
- 80% Identity
- -