Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720452.1:73717853-73719665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.7e-05 0.017 17.8 4.1 1 23 114 136 114 136 0.98

2 14 0.015 3.7 10.4 2.8 1 23 196 218 196 218 0.95

3 14 9.3e-07 0.00024 23.6 2.5 1 23 221 243 221 243 0.98

4 14 0.00026 0.066 15.9 4.0 1 23 256 278 256 278 0.99

5 14 7.8e-06 0.002 20.7 0.6 1 23 281 304 281 304 0.96

6 14 0.0036 0.91 12.4 1.9 2 23 322 343 322 343 0.97

7 14 0.00042 0.11 15.3 1.0 2 23 349 371 348 371 0.93

8 14 3.9e-05 0.0099 18.5 0.7 2 23 378 399 377 399 0.97

9 14 4.8e-05 0.012 18.3 0.0 1 23 405 427 405 427 0.98

10 14 7.3e-06 0.0019 20.8 2.1 1 23 433 455 433 455 0.97

11 14 4.6e-06 0.0012 21.5 0.1 1 23 461 483 461 483 0.97

12 14 0.00028 0.071 15.8 2.4 1 23 489 511 489 511 0.96

13 14 4.5e-07 0.00011 24.6 0.4 1 23 517 539 517 539 0.97

14 14 0.00026 0.066 15.9 4.9 1 23 545 567 545 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.7e-05	0.017	17.8	4.1	1	23	114	136	114	136	0.98
2	14	0.015	3.7	10.4	2.8	1	23	196	218	196	218	0.95
3	14	9.3e-07	0.00024	23.6	2.5	1	23	221	243	221	243	0.98
4	14	0.00026	0.066	15.9	4.0	1	23	256	278	256	278	0.99
5	14	7.8e-06	0.002	20.7	0.6	1	23	281	304	281	304	0.96
6	14	0.0036	0.91	12.4	1.9	2	23	322	343	322	343	0.97
7	14	0.00042	0.11	15.3	1.0	2	23	349	371	348	371	0.93
8	14	3.9e-05	0.0099	18.5	0.7	2	23	378	399	377	399	0.97
9	14	4.8e-05	0.012	18.3	0.0	1	23	405	427	405	427	0.98
10	14	7.3e-06	0.0019	20.8	2.1	1	23	433	455	433	455	0.97
11	14	4.6e-06	0.0012	21.5	0.1	1	23	461	483	461	483	0.97
12	14	0.00028	0.071	15.8	2.4	1	23	489	511	489	511	0.96
13	14	4.5e-07	0.00011	24.6	0.4	1	23	517	539	517	539	0.97
14	14	0.00026	0.066	15.9	4.9	1	23	545	567	545	567	0.98

Sequence Information

Coding Sequence: ATGGCTATTCCAACAAATAAGTGCAGAATTTGTTTATTGGaaacacaaaatttgaaacttttatcTGCAGATTATTTAATCAACGGAGAAACCTTACAAATATCCGATATTATTATATCATGTACAAATattcagATTACATTTGATGACCGATTTCCAAACTACATATGTGACAATTGTCTACAAGATGCAAACACggcatatttgtttaaaaaacgaTGTGAACAATcagaaaactatttaaaatcaCAATTAGAAGTCTTAAAAAAAGATTTTGCTTGCAATGAACAACAAACAGCATTAGATAAACATGTATCTACTCATAATAAAAATAGGAAATACACAtgtaatttttgtaatgaattttttactaatgaaaatagtttaaataatcATATGCATAGTcatacaaaaaatactttaagaGCAATGAGAAAAAGTAGTAAAAAGATCGTAGTTTATGATTCAGATTCAAGAGATAACTTTGATGATTACAACAATTCAGAAGACGAAACAAATGTTGAAGATAAAACAAAATGGCGGCAAATACTCCAaaacgaaaaagaaaagaatgaAAATGGTTTTTATGTTTGTTTGTGTTGTCCACAGGAATTTAGCCAcacaaaagaattaaaaatacacatcaATTCACATACATCATTCCAGTGTAAGATATGCCCAAAAAAATTCACCCTGTTATCAAATTTACGCCGGCATTATAAACTACATGACACATCaaacacaaatttcaaaaataatactGAATACAAATGTGTTTCTTGCGAAAAAGTTTTTCACAGACGAAAACAGCTAAGTGAACATCTAAAAACACATGAAGATTTCACTTGTCCGGTATGCAACGCAAAGTTTTCGTACGCTACTAATTTGCGAAAACATGTAAAATGGCAGCATCGCCCTAAAGATGAAATTAGAGTTATGAAACAGATTCCGTTACAGCAAAGAACCTGTGACGTATGTTtgaaaacttttaaatataGAGTTAGTATGTTGAAACACAGAAAATTACATGATTTCAACGGAAAAGTCTGCAAGTATTGcgatgaaatatttgaaaatgcgATGAAACTACACCGCCATATGGATGAAAACCATGAAAACGAGAAGAAAATTGTTTGTAATATCTgtgaaaaaaagtttttctttgaaCGGAATTTACGCATGCATATGAATGTACACACGGGTGTCAAACCGTATATGTGTGAAATATGTGGTCTTAGTTTTGCACTCGCCGGCAACTTAAGTGTCCACAAACGTTTACACACAGGGCTTCGCCCCTATAAATGCTTAGTATGCCACCGAACCTTCACCCAACAATCTGCTTTGCGAAGCCACGAAGCTTCACACTCCTCCAGTCGAGACCACGTCTGTCCGGAATGCGGGGCCGCTTTTTCCCGAGCAGGGGCCTTGCGGAACCACCGCGCTAGACACATTGGGGCCCGCTTGCACGCCTGCAGTCTCTGTCCGAGGCGGTTTACATTCAGCGCGGAACGGAAACGACATATGCTTACGCATACGGGCGAGAAAACACATATGTGTAGTGTTTGTGGAAAGGCGTTTAACAGAGGGGCCAATTTGAATGTGCATATGCGAATACACTCGGGGGATCTGCCCCATAAGTGTGAAGTCTGTGGGAAAGGATTCGCGCAGAAGCAATGCATGAAAATGCACAGAAACACGCATAAAAACGAGAAAGAAATGGAGAATAATTTGGAACTCATTGTACCAGATTTGTAA
Protein Sequence: MAIPTNKCRICLLETQNLKLLSADYLINGETLQISDIIISCTNIQITFDDRFPNYICDNCLQDANTAYLFKKRCEQSENYLKSQLEVLKKDFACNEQQTALDKHVSTHNKNRKYTCNFCNEFFTNENSLNNHMHSHTKNTLRAMRKSSKKIVVYDSDSRDNFDDYNNSEDETNVEDKTKWRQILQNEKEKNENGFYVCLCCPQEFSHTKELKIHINSHTSFQCKICPKKFTLLSNLRRHYKLHDTSNTNFKNNTEYKCVSCEKVFHRRKQLSEHLKTHEDFTCPVCNAKFSYATNLRKHVKWQHRPKDEIRVMKQIPLQQRTCDVCLKTFKYRVSMLKHRKLHDFNGKVCKYCDEIFENAMKLHRHMDENHENEKKIVCNICEKKFFFERNLRMHMNVHTGVKPYMCEICGLSFALAGNLSVHKRLHTGLRPYKCLVCHRTFTQQSALRSHEASHSSSRDHVCPECGAAFSRAGALRNHRARHIGARLHACSLCPRRFTFSAERKRHMLTHTGEKTHMCSVCGKAFNRGANLNVHMRIHSGDLPHKCEVCGKGFAQKQCMKMHRNTHKNEKEMENNLELIVPDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00769028; iTF_01104945;
90% Identity: iTF_00769028;
80% Identity: -