Oard039296.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- MBD-R2
- Assembly
- GCA_943138245.1
- Location
- CALPBP010001253.1:489341-497361[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-17 1.3e-13 52.0 0.0 6 69 431 492 426 500 0.89 2 2 0.82 5.9e+03 -1.4 0.0 42 61 1083 1102 1082 1112 0.87
Sequence Information
- Coding Sequence
- atgggTCGTAAGTGTAATGTATTAGATTGTCCATCAGATTCAAATCGAACCGAAGACAATGGCGTAACATTTCATAAAATGCCATTTCATCCAGATTTACGACCAAAATGGATAGAATTATGTCGCATTCCCAAAGAAAGGCAAACAAATAAAGTGATTTATGTTTGTTCAAGACATTTTAGACGAACAGATTTCTGCAATTTCAAAGGTACAAAGTATATGCTTCGGCAGGGTGCTCTGCCCTCAGTATTTCCGTGGACTAAAAGCATTATAATACCACCACAAACTAGTAAAACTACATTACCAATAGATGAAGAAAGTAATTCTATAGAAATTAAAACCGAAGAACCTGAAGAAGAAAAGTCAAATAATGTTGATGAATTAGGTGAAGTAGAAATCAAAATAGAAATTCCTGAAGAAcctgaagaagaaaaagaaaaacctaaaataaaaaaagatatttctCCCCCAGCGAAAAAAGAcacaacaactacaagtaaaaAAGAACCTGTTCCAgttgttataaataaagaaattactgAAATAATACCAATTCCaccaatagaaaataatatatctcCTGTTACAAGAACCGAACCTATAAATTTCTTGCCAGGGACCAGAATAGAAGCtaatgattttaatgaaaagtgGAATCCTGCAACTATTTTAGAAGTAGATTATGATGAAAATGAAGTATTTGTTGAATtcgaaaaacatttaaataaagcaAACGAGTGGATACCAATGGATAGTTCCAGATTACGACCATATCATCCGCCGTCCAATAATATTGAAACATATGCTGTAGGAGAAAGAGTTCTTGCAGCTTGGATAAAAACAGTTAATAAATTTCCAGCTACAATTAAAAAAGTCATAGATTCCGAAACATATGAAGTCTTATTTGATGATGGCTTTTTAAAAGTACTGAAATATTCCAAACTTGCAAAAATTAAAGACGTATCAGCTAATCGGGGTCGTCTGAAAAAACATTCATCGCCTTTATTCGATCCTGTAGTTGGATCGAAAGAAGACAGGAGAGAAAGAAAACGAAAATTAAACGTTGCAGAATTGTTTGGCAAAATTCCTGCtggcaataaaaaatataaaggagACGAATATGTTAGATCTGAACCAGAAGATGATGTACAATCTCAAGAAGAATTTAGAAGTACTGGTTCATCTAGTCAAAATGAAGGTGAAGAATGGACTTGTCGCTGGTTAAACGGTGAACCAGTTGGAATTGAATCAGAACTAGAAGGACTTGATGGTCCAAGACGATCAATTATAGTCGCAGATCATCGTTTGCCTCCAGGTTGGGAAAAACATTTAACTCAGAGGCTACATGGAAATAACGCCGGAAAATGGGACGCATTTATAATAAGTCCTAATGGGAAAAGATTTTCAACTCGCGCACAAGTAAAAACATGGTTGGAAGATAATAAAATGGATTATAACGTAGAAAGATTCGATTTTTGCCTGCATTTAAATCGGGCCAAAAAATTAGGTCTATATGAAATTACCGACCCTGACGCGTTATCTGCAGCAAAAGCTGCTCATCCCAAAGAACCATTCAAATCTCACAAACGATCAAAATCCCACAGTACGAAAATTTCAACTCCAAAAAGTGGTAGTACTGTCAATTTACCCGTAACTCCAGATATCCACGAGCGTTTTcctgaagaagaagaaatagacACTTCACATTACTTGAAAATTATTCATGAAGATGGTAGTTACAAGTGCCCAATAGAAGGCTGTGGAAAAATTTTCCGAAAAGAAAATCTAGCACAGATGCACGTTAAACATTACCATCCAGAATCTGCCAAACTTTTAGGATCCACTCCAAATGTTGCTGATTTAGCGTACGCTAGAACTGTTGGAGAACATATTGACGACATTGTACCAAAAGCAAGAGGTGTAGGCTCTCCTCacgaaaaacaagaaaaaagtgTTAGGTCTGAATCAACTCCAAGACCAAAATCTACCCTAAGAATTTTGCAACCTAAACTCCAATCAAAAATAGAGGAAGGAGAAATGAGAAAATCCATCATATCCCCTCCTCTTCATCTTCCAAAACAAGCCAAAGATTCAGAAATTATCAGATTGCTGAACAGCGAACCAAAAACCAAAACAATTGAATCTATTTACGAAACTGTTTCTTCAAAAGCTCACGAACCTGTTCCAATAAAAGAAGAACCTGTTGAAAAATACCCAGACATCAAACTTAAAGATCTATTGCACAAAGCAGAACCAATTCCCCTGTTTAAAAAAGAAGAACACAGACCAACCGGAATCAAAACTCTTCTTCCTGTAATACGTCACAATCTAGACGAAATTAAACAAGAGATGGAGGAACCGGAACCTGGTTTTCACGCACTTCCAAAAGCGGTTGAAAGGTTAAAACCAAGAAAGCGACAATCTTCAGACAACAGCGAAGCAAAGAAAAGAAGATCTTTTAGATATGAGGACGAATTGTCGGATTTCTATGAAGCGGATAGTCATTCGCAAGATTCCTTCAAAGAGAAGAATGTTTTTGAAATGCAGCCTATTGCTCCAGTGGCAGAATCGCCGCAAGTTATTATCGAGGGGGGCGAAGTTATTCGTTTAGTACATATGAGGAGtgaagaaataataaattgtacatgTGGTATAACAGAAGAAGACGGTCTTATGATTCAATGTGAGTTATGTTTATGTTGGCAACACGctcattgtaataatattaaaaaagaaaacgaAGTAcccgaaaaatatatttgttatatatgtaaaaatcctCCAAGAATGcgtgtttctaaaaaatatatacatgacCAAGATTGGTTAAAACAAGGAGTGCTCCCAGCCGCAAATTATCATACGAAAGATGAAGAAGCTCTCAAagagaaatttgaaaaattacgaAAATCACATGAACTTAGTGGATGTTTAGtggaattaaatgaatatataaaCAATCTTCGAATTAAACTTAATATTGCAGAtaaCAAAGATCACcctaaactttatttatggagtAAAGCGTGGAACAAGCCAGTCCCTAATGAAAACTTAAACGCGatgttaaattcaaaaacaGATCATATTAAAGATATTAAAGACGAAAATCTGAATTCAAGCTTTTCTGGTTCGGATCATAGTTATATAAAAAGCAGCACATTCGGCGATATTGCCCTTAAAAGCATGTTAGAACCACCAGTTGAAGAAATAAAGCACGAAAATAAACATATGCTCGACACTGACAAAATTAAATCAGAATCAGAACTAATTTCTATTCTTGAAGAAGGGACAAATATTAAATCTGCCATAAAAACAGAACCGCCAGAATTCCCAAAAATTGATCTGAATACAATGATCGCTAATAATTTGGGTGATAAACCCGAATCAAAAAATGATCTTCCAGAagttaataaagaaaatgcCTTGAGCGGAATTTTGAGCACCGGTTCTTTAGAGTTGGCGTTATCCCAAACTGATTTAGTTACTTCATTCGCCCACTTAAATGAAGTTGAAACAACTCCCATAGTGCCCCCTGTCAATATTCCCCAACCCGAAGCAGTTATAGATCCATCCGATTGTCGAATGAATTTAATTGAACATGTTTCTCATTTCCAAAGTCTGGTGGACGAAAGATTGAATTGCATTGAAGCGGAAATAAGTGaattggAGGACCAAGATTCAGATGATGATGAGGACGCATATCCAAAAATGAAACAGTCGTTACAAATGTTGATAAAAGATCTTGCAGCAATGCGGCAGATAGCTGCTTTgagcaattaa
- Protein Sequence
- MGRKCNVLDCPSDSNRTEDNGVTFHKMPFHPDLRPKWIELCRIPKERQTNKVIYVCSRHFRRTDFCNFKGTKYMLRQGALPSVFPWTKSIIIPPQTSKTTLPIDEESNSIEIKTEEPEEEKSNNVDELGEVEIKIEIPEEPEEEKEKPKIKKDISPPAKKDTTTTSKKEPVPVVINKEITEIIPIPPIENNISPVTRTEPINFLPGTRIEANDFNEKWNPATILEVDYDENEVFVEFEKHLNKANEWIPMDSSRLRPYHPPSNNIETYAVGERVLAAWIKTVNKFPATIKKVIDSETYEVLFDDGFLKVLKYSKLAKIKDVSANRGRLKKHSSPLFDPVVGSKEDRRERKRKLNVAELFGKIPAGNKKYKGDEYVRSEPEDDVQSQEEFRSTGSSSQNEGEEWTCRWLNGEPVGIESELEGLDGPRRSIIVADHRLPPGWEKHLTQRLHGNNAGKWDAFIISPNGKRFSTRAQVKTWLEDNKMDYNVERFDFCLHLNRAKKLGLYEITDPDALSAAKAAHPKEPFKSHKRSKSHSTKISTPKSGSTVNLPVTPDIHERFPEEEEIDTSHYLKIIHEDGSYKCPIEGCGKIFRKENLAQMHVKHYHPESAKLLGSTPNVADLAYARTVGEHIDDIVPKARGVGSPHEKQEKSVRSESTPRPKSTLRILQPKLQSKIEEGEMRKSIISPPLHLPKQAKDSEIIRLLNSEPKTKTIESIYETVSSKAHEPVPIKEEPVEKYPDIKLKDLLHKAEPIPLFKKEEHRPTGIKTLLPVIRHNLDEIKQEMEEPEPGFHALPKAVERLKPRKRQSSDNSEAKKRRSFRYEDELSDFYEADSHSQDSFKEKNVFEMQPIAPVAESPQVIIEGGEVIRLVHMRSEEIINCTCGITEEDGLMIQCELCLCWQHAHCNNIKKENEVPEKYICYICKNPPRMRVSKKYIHDQDWLKQGVLPAANYHTKDEEALKEKFEKLRKSHELSGCLVELNEYINNLRIKLNIADNKDHPKLYLWSKAWNKPVPNENLNAMLNSKTDHIKDIKDENLNSSFSGSDHSYIKSSTFGDIALKSMLEPPVEEIKHENKHMLDTDKIKSESELISILEEGTNIKSAIKTEPPEFPKIDLNTMIANNLGDKPESKNDLPEVNKENALSGILSTGSLELALSQTDLVTSFAHLNEVETTPIVPPVNIPQPEAVIDPSDCRMNLIEHVSHFQSLVDERLNCIEAEISELEDQDSDDDEDAYPKMKQSLQMLIKDLAAMRQIAALSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768532;
- 90% Identity
- iTF_01104538;
- 80% Identity
- iTF_01104538;