Basic Information

Gene Symbol
stc
Assembly
GCA_963932345.1
Location
OZ010718.1:7465545-7479256[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2e+04 -4.4 1.6 15 19 537 541 536 541 0.81
2 15 0.14 1.4e+03 -0.4 0.1 4 10 570 576 569 577 0.94
3 15 1.9e-06 0.019 15.2 10.8 4 18 587 601 585 602 0.94
4 15 1.9e-06 0.019 15.1 15.3 1 18 638 655 638 656 0.92
5 15 0.57 5.9e+03 -2.4 0.6 1 5 665 669 665 674 0.83
6 15 0.65 6.7e+03 -2.6 1.1 6 10 684 688 683 688 0.89
7 15 7.2e-08 0.00074 19.7 10.9 1 19 694 712 694 712 0.97
8 15 1.9e-05 0.2 11.9 13.4 4 18 759 773 752 774 0.86
9 15 1.6 1.6e+04 -3.8 2.0 5 10 803 808 803 808 0.93
10 15 0.0033 34 4.8 11.2 1 11 814 824 814 836 0.88
11 15 1.9e-07 0.002 18.3 19.5 1 19 841 859 841 859 0.98
12 15 0.48 4.9e+03 -2.1 0.7 5 10 887 892 886 892 0.94
13 15 2 2e+04 -8.4 11.3 10 19 906 916 895 916 0.71
14 15 3.6e-07 0.0036 17.5 11.2 1 16 952 967 952 977 0.86
15 15 7.7e-06 0.079 13.2 13.7 1 19 984 1003 984 1003 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGGTCCGACCAGGCTGGTCCGTCGGATGATCAAAATTTTTATCTTCTGGCGCACGCGTTAAACGCCGCGGCTAATCCGCGAACCTGGGACTACTATTCGTCAGCTGGAAACGTCGGATATTCGCACGATTCGATGGGCATGTACGCTCAGAGCAATCTTTCGAACTCTGCGGCGAACCAGAGTTTCCCGAGCGCCGGCTATCAAGGATATACTCCGCCCATTAACGAGAGCGCTCCTCCGATCGCCAAGGAACCTCGCTACTTTAAGAACAATACCCAGTCGCAAGAACTTCCGATGTACAATAATCGTCACGTCAATTACGCTCAGAACGAGTCGGACGTTTCGAACACGCAATACTCGAATCGTAAGGGAGACACGAGTTTGGCACATTACTCGAATCTTCACGCTGGCGCGAGTGAATTCGTGCCGACGCCGATGTCGATGAATCAGCCAAAAAGCTCGTCCTCGTACGACGGCGCGGACTTCCAGTACAACGACTATCCGAATGAGAATCCTcaatcgtcgtcatcgtcgtcacaTACGTTCTTCGGCGATAACAGAAATCGTGGTAACGAACGACGCTACGACAATGCGAGAAGCAACAATTCTTACCGGGGCTCGTACAAGCCTCAACGTTCGCGCAATTACGAGCAAACTTACGGCGGTTCGAGAGGCAACGGGGATTCGACAATGACCAATCAAGATGCTTCGTCGTTAAATGTACAATCGGAGGATAACACTCATCGCGGAAGCACAAAAAATCCGCGAGCTCGCAATAATCACGGTAGATTTACAAACGAGAGATACACGAACAATCGTCAGCAGCGTGACAACAATGAAAAATCGCGGCCGGACAGACGAAAAATGCAAGTAGATACTTGGCAAAATCCTAGCGAATCTTATCGCGATGGGAAATCGAGCAACGAGGATTCTCGCGATAATCATAGCGTTTCGAATAATCGCGGTAAATGGTCGAGAAACGACAGGAGATATCAGAACGATAGATATCCGACTAATAGTCGTCAGCAGAACGATAAAATGCATCAAGGTTCGAACGAGTACGAGGATCAACAGAACTTCGATTCCGCGACGTCGAGCAATCCTGCGATCGGTACGAGACGTGAAATTTCACACAATCGAGAGACCGAGAGAACATACAGAAACGAGAGGGGACGCGGCAGGCAAAGAGACGCCACGACCAATTATGAGCCCTCTGGGCATTCTTATTACGATCACGAGGGAGATAATAACGAGAGAGACATCAGCAGTAAATACGATAGATCCAGGGAGGATAACAAGAAGTCGAGGGTTTCGCGCGACGAGGAACCTCAAAGCTGGAGACAGAAGGACAAAGCACCAACCAGAGCTGTAGCGACGAAGAAGTACAACAAGAAAATTGAATTTGATGATGATGCCAGTCAGAGAGAACGATTGACCGAGTTATTGAATCAAGGTCACTTGGAGTGTCTCATTTGTTGCGACTATATAAGGCAAAATGATTCCGTTTGGTCCTGCACCAATTGCTATCACGTTCTACATCTTAAATGCCTGAAGAAGTGGGCACACTCGTCTCAGAGCGAAAATGGTTGGCGATGCCCAGCTTGCCAGAACGTGAGCTTGACCGTCCCCGAGGTGTATTATTGCTTTTGTGGCAAAGCCCGAGCTCCCGAATGGAATCGCCGGGACGTCGCTCACTCGTGTGGCGAAATTTGCGGCCGTTTGAGAGCCAAGAACAACTGCGTTCACAAGTGCACGTTGCTCTGTCATCCGGGTGCATGCCCCGAATGCATAGCCATGGTAACCCGACGCTGCGGCTGTGAAAAAACGTCGCAGAGCCTCAAGTGCAGCACCACGACCCTCGTTGTCTGCGAAGCCAATTGCGAGAAGAATCTGAATTGTCGTATCCACAATTGTGAGAAAAAGTGTCATCACGGTGATTGCGGCCCTTGCGACAAGACCTTGCATCAAAAATGCTACTGCGGAAAGCACGAGCGAGACGTTACGTGCGACGTCGATGTACCCGCGAACTACAGTTGCCAGGAAATTTGCGACAAATTACTCGCATGCGGTAATCATCGGTGCGAGGAAATTTGTCATCCGGATAGCTGCGAGGTCTGTACGTTGCAACCGTCAACGGTGACGCATTGTTGTTGCGGACAAACGCCACTCACCGTCGAACGCAAGACGTGCATCGATCCGATTCCCACGTGCGATAAAGCGTGctcgaaaaaattgaaatgcggTCAACCCAGCGACCCTCATACGTGCAAAGTCGACTGCCATCCAGGCGATTGTCCGGAGTGCGAGCTTACAACGAAGGTTCGTTGTCGTTGCGGCAATATGGATCGCGAGATTGCTTGCAAAGAGCTTCGTACAAAGGCCGATGACGcgcgttgcgaaaaaaaatgcacaaagaAGCGTTCTTGCGGCAAGCACAAGTGCAACCAGCTTTGTTGTATCGATATCGAGCACATATGCCCAATGCCATGCTCCAAGACGCTCAATTGCGGGAGACACAGATGCCAATTGTGTTGTCACAAAGGCAGATGTCAACCTTGTCAGGAGATGAGTTTCGACGAGTTGCACTGCGAGTGCGGGGCGTCGGTGATTTATCCTCCGGTTCCTTGCGGCACGCGGCGACCAACTTGCAGTCGTCCATGCACACGTCAACACTCTTGCGGTCACGAGGTTCTTCACAATTGCCACAGCGACCCGACCTGTCCACCCTGTACGGTGCTCACTCAGCGATGGTGTTACGGCAAACACGAGATAAGAAAAGCCGTGCCTTGCCACGTGAACGAAATATCCTGCGGCATGCCATGCAACAAGCCTATCTCGTGTGGCAGACACAAGTGTATAACGCTCTGTCATTCCGGTGCTTGCGAAAAGCCCGGCCAAACATGCACTCAACCTTGCACCATTGCCCGCGAGATGTGCGGACACGTTTGCGCTGCACCGTGCCACGACGGCAAGTGCCCGGACACGCCTTGCAAAGAAATGGTCAAGGTCACTTGTACCTGTGGTAACAGAACCATGACACGCGCGTGTGCCGAGAATTCTCGAGAATTTCAGAGAATCGCGAGTGGCATATTGGCGAGCAAAATGGCGGACATGCAACTCGGACATTCGGTCGACCTTGAGGAAGTTTTCGGCCAAGGCGCCAAGAAACAGAATCAACTTAAGACCCTCGAGTGCAACGACGAGTGCAAGATCATTGCGAGAAATCGTCGATTGGCTCTCGGCCTTCAGATCGCAAATCCCGATGTGAGCGGCAAACTCATGCCACGATATACCGAAACGATGAAACAATGGGCGAAGAAGGATCCGCACTTTTGTCAAATGATACACGATCGGCTAACCGAGCTTGTGCAGCTCGCTAAAACATCCAAGCACAAATCACGAAGTTACTCGTTCGACAGCATGAATCGTGACAAGCGTAACTTCGTACACGAGAGCTGCGAACATTTCGGTTGTGAAAGTCAAGCTTATGATCAAGAACCGAAACGGAATGTCGTCGCTACCGCGGTCAAAGATAAGTGTTGGTTACCGAGTTATAGCTTATTAGAGATTGTGCAACGAGAAAACGGTCAACGCAAAGTGCCACGACCAATGCTCAATTCGTCAAAACCGACATCGACTTTGAGATTGTCGAACGTGCTATCTTCAACTGCCAAGGCAAGTCAGAAGCTACGGCCTGTAGCTACAACAGCCTCGAAGTCTCCGGAGGCTGAAATAGattatttcgattttccaaatGGCAAAGCCGACAAGTGGGCCAACTTTTAA
Protein Sequence
MATWDGSDQAGPSDDQNFYLLAHALNAAANPRTWDYYSSAGNVGYSHDSMGMYAQSNLSNSAANQSFPSAGYQGYTPPINESAPPIAKEPRYFKNNTQSQELPMYNNRHVNYAQNESDVSNTQYSNRKGDTSLAHYSNLHAGASEFVPTPMSMNQPKSSSSYDGADFQYNDYPNENPQSSSSSSHTFFGDNRNRGNERRYDNARSNNSYRGSYKPQRSRNYEQTYGGSRGNGDSTMTNQDASSLNVQSEDNTHRGSTKNPRARNNHGRFTNERYTNNRQQRDNNEKSRPDRRKMQVDTWQNPSESYRDGKSSNEDSRDNHSVSNNRGKWSRNDRRYQNDRYPTNSRQQNDKMHQGSNEYEDQQNFDSATSSNPAIGTRREISHNRETERTYRNERGRGRQRDATTNYEPSGHSYYDHEGDNNERDISSKYDRSREDNKKSRVSRDEEPQSWRQKDKAPTRAVATKKYNKKIEFDDDASQRERLTELLNQGHLECLICCDYIRQNDSVWSCTNCYHVLHLKCLKKWAHSSQSENGWRCPACQNVSLTVPEVYYCFCGKARAPEWNRRDVAHSCGEICGRLRAKNNCVHKCTLLCHPGACPECIAMVTRRCGCEKTSQSLKCSTTTLVVCEANCEKNLNCRIHNCEKKCHHGDCGPCDKTLHQKCYCGKHERDVTCDVDVPANYSCQEICDKLLACGNHRCEEICHPDSCEVCTLQPSTVTHCCCGQTPLTVERKTCIDPIPTCDKACSKKLKCGQPSDPHTCKVDCHPGDCPECELTTKVRCRCGNMDREIACKELRTKADDARCEKKCTKKRSCGKHKCNQLCCIDIEHICPMPCSKTLNCGRHRCQLCCHKGRCQPCQEMSFDELHCECGASVIYPPVPCGTRRPTCSRPCTRQHSCGHEVLHNCHSDPTCPPCTVLTQRWCYGKHEIRKAVPCHVNEISCGMPCNKPISCGRHKCITLCHSGACEKPGQTCTQPCTIAREMCGHVCAAPCHDGKCPDTPCKEMVKVTCTCGNRTMTRACAENSREFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKIIARNRRLALGLQIANPDVSGKLMPRYTETMKQWAKKDPHFCQMIHDRLTELVQLAKTSKHKSRSYSFDSMNRDKRNFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPRPMLNSSKPTSTLRLSNVLSSTAKASQKLRPVATTASKSPEAEIDYFDFPNGKADKWANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439892;
90% Identity
iTF_01101015;
80% Identity
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