Oven004489.1
Basic Information
- Insect
- Ophion ventricosus
- Gene Symbol
- -
- Assembly
- GCA_963932345.1
- Location
- OZ010714.1:619394-635381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.2 2.8e+02 2.5 0.0 3 23 280 300 278 300 0.93 2 14 0.0084 0.75 10.6 4.0 3 23 309 330 308 330 0.96 3 14 4.2e-06 0.00037 21.0 1.8 1 23 484 506 484 506 0.99 4 14 0.017 1.5 9.6 1.2 1 20 510 529 510 530 0.95 5 14 0.0036 0.32 11.7 5.7 1 23 543 566 543 566 0.94 6 14 0.011 0.98 10.2 0.7 2 19 571 588 571 591 0.93 7 14 0.00064 0.057 14.1 8.1 3 23 597 617 595 617 0.95 8 14 0.00018 0.016 15.8 0.3 3 23 642 662 640 662 0.97 9 14 0.15 13 6.7 2.9 1 23 667 689 667 689 0.97 10 14 0.0022 0.19 12.4 0.1 2 23 695 716 694 716 0.94 11 14 0.0088 0.78 10.5 8.7 1 23 721 744 721 744 0.96 12 14 0.00083 0.074 13.7 2.0 2 23 751 772 750 772 0.97 13 14 2.5e-05 0.0022 18.5 5.7 1 23 778 801 778 801 0.96 14 14 0.04 3.6 8.4 4.7 1 23 806 829 806 829 0.95
Sequence Information
- Coding Sequence
- ATGCCGCCATTGGAAGAGATCGTGCCACCACCATCTGACAATCTCGCGGTGCTGACGAATGACGAGAAGAAAAATGTGACGGCCGAATCTTACTTGAGAGCCGACCATCGACACGCTCATCTCAGCCGACGAAACGGAGAAACATGCACGAGTCTCGGAGTTTGCGGAATTTGCGGCGAGCTGCACGAAACAACGAGTTGCCGATTCATCGGGCGCTTAGAATACATCCAGGACGAGCCGCCGCTCTCCAGGGCGAGGCAGACTCTTCCGAAAAGTCTGGAAATCACGAGAATGGCGGACGGCAGTACGAGGGTGACGACGAGGCGGGATTTCCCGCGGGGCACAACCTTCGGACCTCTTCAAGCCAAGCGCGTTCGTACGATGAATCCGATGAACGATTTCCCAATAAAAGTCTTCGACGACCGAGCCAGCGATGCTCGCCATCTGGATCGCACCGACGAGAACGCGTCCAATTGGATGTGCCTCGTTGCGCCAGCCTCCAACGCTTCCGAACAAAATCTCCTTTGCTATCAGACCGCGTCCCGCACCGGTGAGGACATTTTTTACACGGCTATGCGCCCGATCGTCTCGGGCGAGGAACTTCGCGTCTGGTACGCTCCGCGTTACGCTCAACGAATGAGAATGCCACTCTGCAACACGGAATTCGCGGTCGTTCCTGAGGCCACGACGATGGAGAGCGACGACGTGCCGTCGATCCTCGAAGAGGAACGGAACGATCAACCGGAAGTATCATCGCCCGGTGGCAACATCGAAGAAATAGCGCAGAGATTGCCGGCCCAGCAGTTAGGCGCTCGAGGCGACAAAGCCACCTGGGACTGCACGATCTGTTCCGTGGTGATGACGTCCGTGATCGAATACGCGAAACATCTTATGCAACATTACAAACCCCTGTCCGGAGTGTTTTGCGACGTGTGCGACAAAAAGTTTCACCGACTCACGGTGTTGCAGAAACACAAACGCCTGAAGCATCCGGACGAAAAGTCGCACGTCGAGGCGGTTGGTATTCCGACTTCCGGTAGTCAGCAACAGCAGAACGCTCAGACGATTCTCATGAACATGAGCGACGTTGAGGGCCAAACGTCCGAAGCGATGAAGGACATATTCGAGAAATTCAAAGCCGTTAGTGCCGCGACGGAATGCAGTCTGTCGTCGTTGATCGACAAGAGTGCAACGAGCGAATTGCTCGACGAGGCTCACGCGATAAACGTTGGCGAACTATTGCAGAGCAGCGGCGGCCTGATTGAGAACGCGTCACTCAAAGCGATCTTGGAGAATCAATGCTCGAGCATCGGAGACTCGATTGTCCTGTCGGACAACGCGAGCACGTGCGCCGAATCGGTAAAGTTCAACGTCGACGAGGAACTGGCATCGGATCTCTTGGAAATACCGCCGGAAGTCAATAGAACGAATCTTTCACGTCACGATCGTTTTCGTTGCGACATATGCGAGAAGAAATTCGAGAAGGCCGATTATCTTTATCGACACTTGAGAAAACACACCGGGGAGTTTATCTGTCACAATTGTCTCGGCGTTTTCGCGCGAAAAGAGAATTTGTTGTCGCACTTGTGTCCTGCATCGTCGCGGAGCAGAAACGAACACCGTAAACACGAGTGTCCCTACTGCCAGAAACATTTTCTCACGAAGAAATATCTCAAGCGTCACGTGACCGTAAGACACAACGAGTCGAACGTGTGCAAGTGGTGCGGAACGTCGTTCGCTTCCGGTCACGAGCTCGAGGCGCACAATTGTCAAGCACCCAAACATCTCTGTGCCCATTGCGGCAAACGTTACGTTCATCGCGAACATCTCACGCGACACCTTAAATTACACGTAAATCCGAGACCCGCAATTACGACGAGAAATCGTACGAGAAAGAGAGCATCGATCGAGAGGCCGGTGATCTGCGAAAAATGCGGCGATCTCTTCAAGAATCCTTACAGCTTGAAGCAACATTTACGATCACacgGCGAAAGGAAATTCGAGTGCGACATTTGTCACAGTAAATTTCACCGGATAGGCGTCCTCCAACAGCACAAATCGGTCCACCAGAGCGTTCAGATACCTTGCCAGATTTGCGGCAAAAAGCTCAAGAGCAAAAAGGCCCTCGGTGTTCACGTTTTGCTCCACGGCAATAGAAAGTTTCATTGCGACAAATGTGACAAAAGTTTCTTCCAAAGATGCAACTACCTCAAGCATTACAAGCAACTGCACAGCGACAAGATATTGCAAAAGTGTCCCCATTGCCCGAGCGAATTCACAAGTGAATTCAGCTTCAACAGGCACCTAGAGAGTCACGCGAAGCCGATCGAACATCCCTGCAAATCCTGTCACAAAGTATTTCGTCGGGAGTACCAGTTGAAGCGTCACGTCCAGACGAATCACAGCGGTATCGTGTTTCGTTGTCCTTACTGCAAAATGACGGCTCGCTATCGTCATAGCATGAGACGTCATTTCGAGCGGCAGCACAAGAGTCTCAGCGACGAGTGGAACAGGCCCGGCTTCGTCAATGATCTCGTCGAAAAAATCGCAGCCCCGAACGAGCaggcattttatttttga
- Protein Sequence
- MPPLEEIVPPPSDNLAVLTNDEKKNVTAESYLRADHRHAHLSRRNGETCTSLGVCGICGELHETTSCRFIGRLEYIQDEPPLSRARQTLPKSLEITRMADGSTRVTTRRDFPRGTTFGPLQAKRVRTMNPMNDFPIKVFDDRASDARHLDRTDENASNWMCLVAPASNASEQNLLCYQTASRTGEDIFYTAMRPIVSGEELRVWYAPRYAQRMRMPLCNTEFAVVPEATTMESDDVPSILEEERNDQPEVSSPGGNIEEIAQRLPAQQLGARGDKATWDCTICSVVMTSVIEYAKHLMQHYKPLSGVFCDVCDKKFHRLTVLQKHKRLKHPDEKSHVEAVGIPTSGSQQQQNAQTILMNMSDVEGQTSEAMKDIFEKFKAVSAATECSLSSLIDKSATSELLDEAHAINVGELLQSSGGLIENASLKAILENQCSSIGDSIVLSDNASTCAESVKFNVDEELASDLLEIPPEVNRTNLSRHDRFRCDICEKKFEKADYLYRHLRKHTGEFICHNCLGVFARKENLLSHLCPASSRSRNEHRKHECPYCQKHFLTKKYLKRHVTVRHNESNVCKWCGTSFASGHELEAHNCQAPKHLCAHCGKRYVHREHLTRHLKLHVNPRPAITTRNRTRKRASIERPVICEKCGDLFKNPYSLKQHLRSHGERKFECDICHSKFHRIGVLQQHKSVHQSVQIPCQICGKKLKSKKALGVHVLLHGNRKFHCDKCDKSFFQRCNYLKHYKQLHSDKILQKCPHCPSEFTSEFSFNRHLESHAKPIEHPCKSCHKVFRREYQLKRHVQTNHSGIVFRCPYCKMTARYRHSMRRHFERQHKSLSDEWNRPGFVNDLVEKIAAPNEQAFYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01103044; iTF_01100833; iTF_01102285; iTF_01101585;
- 90% Identity
- -
- 80% Identity
- -