Oven007353.1
Basic Information
- Insect
- Ophion ventricosus
- Gene Symbol
- -
- Assembly
- GCA_963932345.1
- Location
- OZ010715.1:27120969-27123901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.11 13.2 1.2 2 20 146 164 145 167 0.95 2 13 0.00071 0.063 13.9 4.1 1 23 173 196 173 196 0.94 3 13 3.8e-05 0.0034 17.9 3.2 1 23 202 224 202 224 0.98 4 13 3.5e-05 0.0032 18.0 0.0 1 23 368 390 368 390 0.97 5 13 0.00017 0.016 15.9 0.3 2 21 401 420 400 421 0.93 6 13 0.00057 0.051 14.2 1.9 1 20 442 461 442 464 0.92 7 13 0.044 4 8.3 0.4 1 23 469 492 469 492 0.95 8 13 1.3e-06 0.00011 22.6 0.3 1 23 498 520 498 520 0.98 9 13 0.0021 0.19 12.5 6.3 1 23 527 549 527 549 0.98 10 13 0.00036 0.032 14.9 0.4 3 23 557 577 555 577 0.97 11 13 0.00041 0.037 14.7 0.2 1 23 583 606 583 606 0.96 12 13 1.5 1.4e+02 3.4 0.5 1 23 620 642 620 642 0.89 13 13 0.11 9.6 7.1 0.0 2 23 873 894 872 894 0.96
Sequence Information
- Coding Sequence
- ATGGAGGGCCACGATGGCGCGTACGTTGGTTTCGCGATTCACGAGTCGATGCAGCAGGAGAGCGCAGTGTCGCACGAAGAGGTGTGCGAACCAACGGACGAGTGCATACTACCGGATGCTCTCTCGGGAGTGGTTGGCGACGAGGTTAATTCGGTTATAACGGAGGCTCAAGTGGCGGTGGAAATACTGACCGAGCAGTCGGACGATGACGAGGATAAAACTTCGATGTATCCGATTTACGTTAAGGAGGAGCAGCCGCGTTACACATCGGGCGACGACGAATCAATGGCGGTCGAGGCGCTTCGTCAATTGGGCGGCATGTATCCCTGCTTCGAGGACAGGAGGCTCCGTTGCGTCAAGTGTTCGGCTCTGATGAGTCAAGCGGAGCTTGTGAATCACCGGGAGAGTTGCGGTGTCACGGCAGTCGGCAAGCTTTCGTGCCCGACGTGTCGGGAGGTCTTCGACAGGCGTCAAGATCTCAATAACCACATGGTGTGCCATCAGGTGGACAGGCCCCACGCTTGTCGTACCTGCGGCAATCTCTTTCGTTCAAAGTCCCATCTTCAGACGCACATGCAACAGGTGCACAAAGCTGAGAAGGCGCACAAGTGCACGATCTGCGGCTCGGACTTTCATCGTCCCTCGAGTCTCTCGAATCACATGAAGATTCACAGTTACGTGGCGGGTCGTGCTTTGACGCAGGTTGAGACGAGCGCAGGTGGTGCCAGACAAACGGATGCGCAGAAAAAGTGGCCGGAGGACGAAGCTGCGAACGCGACATCCTCGAGCAATTACGAGGTCCATTGGTCGGTACCGTATACTTTCGAAGCCGGTGTCGATACGATCGCCGCGTCAAACACCGAGAAGATGGACACGCTGCAGGAGTTTACGGTTATGCCGAACGGCGAGGTGACCCAGTTCGAGTACGCGTCCCAGGAACCATTGAATCCAGGCATAAATCAGTACAACATCGGCATAAGTAACTTCGCTAATACGGATTCTCTCGTGAAAATAGAAAATCTCCAATTCACCGGTACCGAGGTAACGAAATACGTTGAGAACGAGGTAAACGATAGTACCACCGCTTTAATAAAGACCACTTACGCTTGCGGTGAGTGCGGCGCTAGTTTTACGCGCACGAGCGCACTTGCAGCCCACTCGAAGATTCACGCGGCAAACAAAACGTGGTCGATGCCGATCGAGTGCGAGTATTGCGACAAGCAATTCCAGGATTCCGCACATTTGGCTAGTCATCAGACAACGTGCGCGAAGAAACTTATGCGCGCGGATAATCACGAGAACGGGAACAACAAATGGGGCAAACACGCGTGCGCCGAGTGCGGCAAGAAGTTCACGACGAAGCAAAAGATGTTTCGCCATCAGTGGATACATAGAAGGAAGACGCATAGCTGTGAGATATGCGGCTCTCAGTACGAGAAGCAAAACGAACTGGACGAGCATCGCTTGTCAGCCCATCCGGGTGACTCGCCCTTCACGTGCACCGAGTGCGGCAAGAGTTTCGTCTCGAGGCAGGGCCTCTGGGAACACGGGAGAACACACGCCGGTAGTCCAGCACACTTTCACTGCGACACTTGCTCCAAGACGTTCTCATCGAGGCAAGGCTACCTCATACATCATCGTACGCACACGGGCGAGCGACCCTACGGCTGTAAATTCTGCTGGAAGGCATTTCGCGACGGTGGCACACTGAGGAAACACGAACGTATACACACGGGCGAGCGTCCGCACGTGTGTCCCCTGTGTTCGCGCGCTTTCAATCAAAAGGTTGTGCTTCGCGAGCACGTCAGATGGGTGCACGCGGCCGGCAAGAACGAGACCGAGGTCAGCGGGCCGCCCTATCCGTGTCCTCTCTGCGGCTCGTTGAATCAGGATCGTGATGAGCTTTGCGCCCACATAGTTAAGCACTCGGACCAGATGATCGCCGAGGCCAAAGCGAAGACGAACAATAACGCGACCAAGCaaaaaattacgagaaaaaaggcCAAGCCGGGCAACGGTGCCACGAGCAAAGCTATCAAGTCGGAAAGCGAAAGATCGATTGCCAGTAACGAGCAAACTGAAGCATTACTCTCGATCGCTCAACCTCACGAGGATTCGGATATCCTGAAGAGCCAGGAGATCGAGGAACAACTTCTTCTCGTCACCGAGGATAAGGAGGTCACACGTGTCGTCACggaaggagaaaaaaacgacgatCAGACTCTCGTTATAGCCGGACAGGCCGCCATACTCGCGAAGATAAGGCAAACCGACGTTCTTCAATTCATACAGACCGCGAAGAGACACGAGACTCTCCGTCTCATCGCCTCGGGCAAAGCCAACAACACTCTTCATCTGATAACCAAACAGAACGAATCGCTACCCGTTTTGGCTATTCGAAATCCTCAGAATCACGAGGATTTCTCCAGTCAAATGGCCGACAACGGTGATTCCCGCATCAACGCCGATAAAATCGCCGACAGCACCGCGGTACAAGATAGCTGTTTGATCGACGACGCGACGAGTACTCTCGTGAGCGCCGAGCAGGTCGCACAATTGCTTCAGGAAcaacagggacagagagagagcgaaaacgAAGACGGCGACGAGGAAATGGTTTGTGGCATATGCGGTGATGATTTCGACGATAAAAACGTCCTCATGGAACACGTGAAGATTCACATATAA
- Protein Sequence
- MEGHDGAYVGFAIHESMQQESAVSHEEVCEPTDECILPDALSGVVGDEVNSVITEAQVAVEILTEQSDDDEDKTSMYPIYVKEEQPRYTSGDDESMAVEALRQLGGMYPCFEDRRLRCVKCSALMSQAELVNHRESCGVTAVGKLSCPTCREVFDRRQDLNNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMQQVHKAEKAHKCTICGSDFHRPSSLSNHMKIHSYVAGRALTQVETSAGGARQTDAQKKWPEDEAANATSSSNYEVHWSVPYTFEAGVDTIAASNTEKMDTLQEFTVMPNGEVTQFEYASQEPLNPGINQYNIGISNFANTDSLVKIENLQFTGTEVTKYVENEVNDSTTALIKTTYACGECGASFTRTSALAAHSKIHAANKTWSMPIECEYCDKQFQDSAHLASHQTTCAKKLMRADNHENGNNKWGKHACAECGKKFTTKQKMFRHQWIHRRKTHSCEICGSQYEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKTNNNATKQKITRKKAKPGNGATSKAIKSESERSIASNEQTEALLSIAQPHEDSDILKSQEIEEQLLLVTEDKEVTRVVTEGEKNDDQTLVIAGQAAILAKIRQTDVLQFIQTAKRHETLRLIASGKANNTLHLITKQNESLPVLAIRNPQNHEDFSSQMADNGDSRINADKIADSTAVQDSCLIDDATSTLVSAEQVAQLLQEQQGQRESENEDGDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100796;
- 90% Identity
- -
- 80% Identity
- -