Ocos004068.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- -
- Assembly
- GCA_951751655.1
- Location
- OX632356.1:48384662-48388602[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.14 13.2 1.2 2 20 146 164 145 167 0.95 2 13 0.00071 0.082 13.9 4.1 1 23 173 196 173 196 0.94 3 13 3.8e-05 0.0044 17.9 3.2 1 23 202 224 202 224 0.98 4 13 6.5e-05 0.0075 17.2 0.0 1 23 366 388 366 388 0.97 5 13 0.00018 0.02 15.9 0.3 2 21 399 418 398 419 0.93 6 13 0.00027 0.031 15.3 2.7 1 20 442 461 442 464 0.92 7 13 0.064 7.3 7.8 0.3 1 23 469 492 469 492 0.92 8 13 1.3e-06 0.00015 22.6 0.3 1 23 498 520 498 520 0.98 9 13 0.0021 0.24 12.5 6.3 1 23 527 549 527 549 0.98 10 13 0.00036 0.041 14.9 0.4 3 23 557 577 555 577 0.97 11 13 0.00041 0.047 14.7 0.2 1 23 583 606 583 606 0.96 12 13 0.5 57 5.0 0.1 1 23 620 642 620 642 0.93 13 13 0.11 12 7.1 0.0 2 23 872 893 871 893 0.96
Sequence Information
- Coding Sequence
- ATGGAGGGCCACGACGGCGAGTACGTGGGCTTCGCGATTCACGAGTCGATGCAGCAAGAGAGCGCAGTATCGCACGAAGAGGTGTGCGAACCGGTGGACGAGTGCATCCTACCGGATACTCTGTCGGGGGTGGACGGCGACGAGGTGAATTCGGTTATAACAGAGGCCCAAGTGGCGGTGGAAATACTGACCGAGCAttcggacgacgacgaggacaagaCTTCCATGTATCCGATTTACGTTAAGGAGGAGCAGCCGCGTTACACGTCGGGCGACGACGAATCAATGGCGGTGGAGGCGCTACGGCAGTTGGGCGGCATGTATCCCTGCTTCGAGGAGAGGAGGCTCCGTTGCATCAAGTGTTCGGCTCTGATGAGTCAAGCCGAGCTGGCGGATCACCGTGAGAGTTGCGGGGCCGCTGCGGCCGGCAAACTTTCCTGTCCAACGTGTCGCGAGGTCTTCGACAGGCGTCAAGATCTGAACAACCACATGGTGTGTCATCAGGTGGACAGGCCCCACGCGTGTCGCACCTGTGGCAATCTCTTCCGTTCCAAGTCCCATCTGCAGACGCACATGCAGCAGGTGCACAAAGCCGAGAAAGCGCACAAGTGTACGATCTGCGGCTCGGACTTTCATCGTCCCTCGAGTCTCTCGAATCACATGAAGATCCACAGCTACGTGGCGGGTCGTGCCTTGGCGCAGTTTGAGACGAGCAGTCGTGCTGCGCTCCAAACGGAAGCGCAGAAGAAGTGGCCGGAGGAGGAAGCAGCGAACGCGCCATCCAATTACGAGGTCCAATGGTCGGTGCCGTACAGCTTCGAGGCCGGCGTCGAGACGATCGCCGCGTCCAACTCCGAGAAGATGGACACGCTACAGGAGTTCACGGTGATGCCAAACGGCGAGGTGACGCATTTCGAGTACGCACCCCAGGACCCTCTGAACCCAAGCATCAATCAGTACAACATCGGCATCGGTAATTTCGCGAATACGGATACTCTCGTGAAAATCGAGAATCTCCAATTCACCGGTACCGAGGTGAAGAATTATCCCGAGAGCGAGGCAAACGAGAGCAGCACAGGCTTGGTGAAGACCACCTACGCCTGCGGTGAGTGCGGCGCGAGTTTTTCACGCGCGAACGCACTCGCCGCTCACTCGAAGATTCACTCGGCCAACAAGGCGTGGTCGATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTCCAGGACTCCGCTCATCTGGCCAGTCATCAAACTACGTGCGCGAAGAAACTGATGCGCGCGGGCAATCACGAGAACGGGGCAGCGAACAACAAGTGGGGCAAACACGCGTGCACCGAGTGCGGCAAAAAGTTCACGACGAAGCAAAAGATGTTTCGTCATCAGTGGATACATCGGAGGAAGACGCACACCTGTGAGATTTGCGGCTCGCAGTACGAGAAGCAGAACGAGCTGGACGAGCATCGCTTGGCGGCCCATCCGGGTGACTCGCCCTTCACCTGCACCGAGTGCGGCAAGAGTTTCGTCTCGAGGCAGGGCCTCTGGGAACACGGGAGAACCCACGCCGGCAGTCCCGCACACTTTCACTGCGACACTTGCTCCAAGACGTTCTCCTCGAGGCAAGGCTACCTGATACATCATCGAACGCACACGGGCGAACGACCCTACGGCTGTAAATTCTGCTGGAAGGCCTTTCGCGACGGTGGCACTCTGAGGAAACACGAGCGGATACACACCGGCGAGCGCCCGCACGTCTGTCCCCTGTGCTCGCGCGCTTTCAACCAAAAGGTCGTGCTACGCGAGCACGTCAGATGGGTGCACGCCGCGGGCAAGAACGAGACCGAAGTCAGCGGACCGCCCTATCCGTGTCCTCTTTGCGGCGCGTTGAATCAGGACCGTGACGAACTTTGCGCCCACATTGTCAAGCACTCGGACCAGATGATCGCCGAGGCCAAAGCCAAGACCAACAACAACGCGACGAAGCAAAAAAATACGAGGAAGAAGGCCAAGCCGGGCAACGGTGCCACGAGCAAAGCTAAGTCGGAAAGCGAAAAATCGATAGCCAAAAACGAGCACACCGAAGCTCTCCTCTCAATCGCTCAGCCTAACGAGGACTCCGATATCATGAAGGACCAAGAGATCGAGGAACAACTTCTGCTGGTCAGCGGCGACAAGGTCGCCCACGTCGCCAGGGAGGAAGACAAGAACGACGGTCAGACTCTCGTTATAGCCGGAGAGACCGCCATAATCGCGAAGATGAGACAAACCGACGTTCTTCAGCTCATACAGACCGCGAAGAGACACGAGACTCTCCACCTCATCGCCTCGGGCAAAGCCAACAACACCCTTCATCTGATAACCAAGCAGAACGAATCCCTACCCGTTTTGGCCATTAGAAATCCACAGGGTCACGAGAATTTCTCCAGTCAAATGTCCGACAACGGTGATCCACGCATCAACGATAACGATAACATCGTCGACGATAGCGCGGTACAGGATGACTGCCTGATCGACGACGAGACGAGTACCCAAGTGAGCGCCGAACAGGTTGCACAATTGCTGCGGGAACAgcagggacagagagagagcgagaacgaAGGCGGTGACGACGAAATGGTTTGTGGCATATGCGGCGATGATTTCGATGATAAAAACGTCCTCATGGAACACGTCAAGATTCATATATAA
- Protein Sequence
- MEGHDGEYVGFAIHESMQQESAVSHEEVCEPVDECILPDTLSGVDGDEVNSVITEAQVAVEILTEHSDDDEDKTSMYPIYVKEEQPRYTSGDDESMAVEALRQLGGMYPCFEERRLRCIKCSALMSQAELADHRESCGAAAAGKLSCPTCREVFDRRQDLNNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMQQVHKAEKAHKCTICGSDFHRPSSLSNHMKIHSYVAGRALAQFETSSRAALQTEAQKKWPEEEAANAPSNYEVQWSVPYSFEAGVETIAASNSEKMDTLQEFTVMPNGEVTHFEYAPQDPLNPSINQYNIGIGNFANTDTLVKIENLQFTGTEVKNYPESEANESSTGLVKTTYACGECGASFSRANALAAHSKIHSANKAWSMPIECEYCDKQFQDSAHLASHQTTCAKKLMRAGNHENGAANNKWGKHACTECGKKFTTKQKMFRHQWIHRRKTHTCEICGSQYEKQNELDEHRLAAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNATKQKNTRKKAKPGNGATSKAKSESEKSIAKNEHTEALLSIAQPNEDSDIMKDQEIEEQLLLVSGDKVAHVAREEDKNDGQTLVIAGETAIIAKMRQTDVLQLIQTAKRHETLHLIASGKANNTLHLITKQNESLPVLAIRNPQGHENFSSQMSDNGDPRINDNDNIVDDSAVQDDCLIDDETSTQVSAEQVAQLLREQQGQRESENEGGDDEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01102249; iTF_01101531; iTF_01103004; iTF_01103744;
- 90% Identity
- iTF_01102249;
- 80% Identity
- -