Oven005026.1
Basic Information
- Insect
- Ophion ventricosus
- Gene Symbol
- -
- Assembly
- GCA_963932345.1
- Location
- OZ010714.1:12142724-12147144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00025 0.022 15.4 1.0 1 23 234 256 234 256 0.95 2 18 0.054 4.8 8.0 1.8 2 23 304 325 303 325 0.95 3 18 1.6 1.4e+02 3.4 0.0 5 19 408 422 407 424 0.92 4 18 0.0016 0.14 12.8 1.2 1 23 426 448 426 448 0.97 5 18 0.00086 0.077 13.7 0.6 1 20 566 585 566 587 0.94 6 18 0.00033 0.03 15.0 0.4 1 20 596 615 596 620 0.93 7 18 0.00023 0.021 15.5 3.7 1 23 711 733 711 733 0.97 8 18 4.9e-05 0.0043 17.6 3.9 1 23 800 822 800 822 0.97 9 18 0.00053 0.047 14.3 1.1 1 20 827 846 827 848 0.94 10 18 0.013 1.2 9.9 0.2 2 23 859 880 859 880 0.95 11 18 1.3e-05 0.0011 19.4 0.7 2 23 919 940 918 940 0.97 12 18 2.6e-05 0.0023 18.5 1.6 1 23 945 967 945 967 0.95 13 18 9.3e-05 0.0083 16.7 1.2 1 23 973 995 973 995 0.98 14 18 4.5e-06 0.0004 20.8 0.4 1 23 1011 1033 1011 1033 0.95 15 18 1.4e-06 0.00013 22.4 0.3 1 23 1039 1061 1039 1061 0.99 16 18 2.7e-05 0.0024 18.4 0.3 1 23 1067 1089 1067 1089 0.98 17 18 0.00015 0.013 16.1 4.1 1 23 1095 1117 1095 1117 0.96 18 18 0.01 0.93 10.3 0.4 1 20 1123 1142 1123 1144 0.89
Sequence Information
- Coding Sequence
- atgcaCCGTCCTGTGCACCCCGCAGGCGGCCCTTTGGCATCGTTGGCCAAAAAACCTGAACCTTGCGATCATTTGCTCTTGGACAGAATGCACATCTCGCCGCTCTTTTGGCCCAATCCTTGGTGCTTTTCTGAGCACAAAGATGACGGTGTATCGGACGAGGAGGAGAGCGGTGTGTCGGCCATGCTTCGAGCCAACGACCAGCACTACCTGGACGAGGCTGAGGGCACCGTAGTCGAGTTGGGTGACTGCGCCGAGGCGTACCCCGACTCGGCCAAAACCGAAGGCCTTCCCGACGGTATAACAGCCGAAGAGCACAATTACATAATGCAGCAGGGTTACGCTTTGACGCGGAACGATCACGAGGAGCTCGTTGACACGCAGGAGAGCGTCGAGTCGATGAACAACGAGTCTGCAAATTATTTGTCACTGATCGCGGACGAGATGAGTCCCGTCAAGGAGAGAGAAGCCGAGCAATCGGAAGTCCGTGAAAACCACCACGAAGCCGAGCAGCCGGAAGTCGCGCAAGTCCAGCCGGACATGAGGGTAGAAAAAACGTCACCGGGCGAAACACGCCGGAGCAAACGAAAAGCGAACAAACGTCGGCGTACCGCGAGCGACGAGGACAGCTACTTCGAGAATTTGAATCTCAGCAGTAGATTGAAACGAGCGCAGTTAGACAAGAGTGAGAAACTCTACTTTCTCTGCTATTTGTGCGACAAAAGATTCGTTTCCAAGGATATACTTAAGGAGCACATGCGCTCGCACGCGGAAGTGAGGCGCGCCCTGTCGTTGAGAAAGGCGGAAAGTTCGGATGGGCGCGTTTCGACGAGTCCAACCAAGGTCACGCCGACGAAAACAACCAACAGCGAGAACGCCCCGGGCTCACTGTCCGGCAAGAAAGCCAACAAGTGTCCTCACTGTGGCAAAGAGTATCTCTACGTCATATCGTTCAACAAGCATCTTAAGCAACACGAGAAGAACAAAGGCAACGCCTCGAAGGACTCGTCCTTCTCCCAAGAGGATACCGCTCGCGAGGAGGCCAAGGAATCCTCAGATCAGATCGATCGCGACGAGGCCCGTGAGTCCGAAGCCGCAAGTCGCGTCACCGCCCCCGAGGAGAAGCGAATCCTCCTCGAGGACCAAACGGATCCGAGAAACGATGCCGAGGCGAAAAGCCACGCGAGAAGTTCGTCGCGAAACGAGACATTGAGTGGCGACAAGTGTCCTGAGAGCTTTGCCAACCGACCCGAGCTCTTGGAGCACTCGGCGAACTTCAAGTGCAACACATGCGAGCGAGAGTTCGACGGGCTTGAGAAGCTTCGAAGACACAGAAGCGAGCACGTGGTCGAGGGTGTGCTGTCCCAACAGGATCTCGAGGACAATATTTACGTGAGCGAGTTCGAGGCGAAGATACGCGACAACAGCGCCGCCTACGAGAAGAGCGTCGAACTCGCGACATGTCGCGACGAGGCTAACGAGCCTGACGAGGACTCGGCTGATCGGACGGTGAATTCGTGGCCCGTCGCAATGGCGCACGAGGACGTGATTGATCACGAGGACGTCAAAGACGTACGTTTGAACGATGACAATTGGACCGAGCCCAAGAACCACGAATGGCCAAGTTGCATCGCTACATGCTCAAGCAAAAAGTTGAACGAACGAAACATGGAAAATCACCGAGCTCGGACGAAACACGTGTGCAAATTGTGCCGTGGCGAATTCACTACGAAAGATAATCTTCGACGTCACGTTGAGCAGGAATACGCCTGTAGAACGCGAACTTTCAAGTGTACCGATTGCGGCAAAATATTTGGCAACGAGCTTACCCTGCGCAATCATTTGTTCGCGACCGACCACAAAACAATATTACAGGGACAGCCTTACGATCCGAACAAGCGAATGAAGCGTGTCGCGGCTAAAGCGGCGCAAAAAATCATCGACAAGATCAAGACCGAGGACGATATCGAGTCGTCAGAGTCTGAGGAGAACGAGATTAAGACCGAGAATCATTGCGACGAGATGCAGACTAGCTCGCAAGATTCGAAAACCAACAGCTCCCGATGGAGTCGCCAGGAAGAGGACACGACGAGAAAAATCTCGACAAATCACACTCGTCGAAGACACAATTATGAGTGCGAGACCTGCGGCCGAAAGTGCCGATCTAAGCAATCCCTGACGAAGCACGTGTCGCAGCATCGCGCCAAGGAATCCGTCCTCGAAGCCTCTGAAAAATCGGACCGACGAGCCGTAGTGACGAGTCGCGTGCCCGAAAGATCGAACATACCCCAACACACGAGCAAGCCCGCGAGCTTGAGACGCGACCTAAAACACGAGGACGACACCGACAACGAGAATTCGGATTTCGAGAGCGGCCTCGACTGGCCGGTCGACAGTCACGAATGTCCCACATGCAAAAAGAAGTACAGCACAAAAAAGTCCCTGTTGCGTCATCAGCTGCTCCACGAGAAGCCGAACTTCGAATGTGACATATGCAACGTAAAGTTTTATCGCAAGGATAAACTAAAGTCGCACTACGACAAGTGCTCGGAGAAGAATCCCGATCAGGTGCGAAAGTGCAACATATGCGGCGAgatattcgagaacaacgagaTACTGCGCTTGCACCGCGGTCGTCACGTAGACGAGGGTTTGCTGACCGAGGAAGATTTACGTGAGCTCGAGCCGGGCACCGAGGAGGGACAAGACGGTGGAAAAGTCGCCCGAAAACGTCGCACCGATATCGTTGGCCTCGAATGCACCGAGTGCAACAAACGCTACACCTCGAGGAAGGGACTGCTCCGTCACATACAAGTACACGAGGGCAAGAAATATCTCTGCGACATATGCCCGAAGAAATTCTATCGTCGCGAACATCTCAAGATTCACGTCGCCAAGCACAACATGATCAAGCCTTACAAATGTCCACGCTGCACAAAACGCTTCATAAAGGAGGAACAATTGTCGACGCACTTGGCTAAACACGATCGCACCTTCAAGAAACCGAAAGAGGCCGACACCTCGAAGCGATTCCTTTGTGAGATATGCTCCAAGAGTTTCACCCAATCGACAACGCTTATAGCTCATCTGCGCGCTCACAACGGCATCAAGCCTTACGTGTGCGAGGTATGCGCACGACCATTCACCACCAACGCTTACCTCAAGATGCACATGAGGACACACACACAGGAACGACCCTACAGCTGTCAATACTGCTCGAGGGCTTTCGCTCGCGCTGACACACTCGCCAATCATCTCACATCCCACACCGGCGAGGCCAAGTATCATTGCaaatattgtccgaaaaacTTTCGACGTCTCAAGTCCCTCAAGGAACACGTATTCATACACACGGGCCAGAGACCGTACGCGTGTCCCACCTGCGATCGTCGCTTCAACAACAACGGCAGCCGATACGCACACAGCAAACGTTGCAAACAGAATCATCTACAGAATACCGGAAGTCGAGTACAGACGACAATATCGACGAGTCCCGTACTGCAGGAACATCTCCTTCAACCTATCAGGCTTCATCAACTTAGCGAGAGCCACGAATGGCTCGACGAACACGAGGAACACCATCAGACTCAGATACAATTGGTCAAGTCGCAGAGCATTAAGACTATCACTATCGCGAGAACCACCGACGATCTCACCGGAACTCAGATGATGCAGCAGCAGGAGATCCTTATGCCTCTCATATTACCCCTCACCGTCACCCTCACCGACGCCGACGAGGAAGTCATTCTCCCCGAGGGCACCAAAATATACACCACCGCTTAA
- Protein Sequence
- MHRPVHPAGGPLASLAKKPEPCDHLLLDRMHISPLFWPNPWCFSEHKDDGVSDEEESGVSAMLRANDQHYLDEAEGTVVELGDCAEAYPDSAKTEGLPDGITAEEHNYIMQQGYALTRNDHEELVDTQESVESMNNESANYLSLIADEMSPVKEREAEQSEVRENHHEAEQPEVAQVQPDMRVEKTSPGETRRSKRKANKRRRTASDEDSYFENLNLSSRLKRAQLDKSEKLYFLCYLCDKRFVSKDILKEHMRSHAEVRRALSLRKAESSDGRVSTSPTKVTPTKTTNSENAPGSLSGKKANKCPHCGKEYLYVISFNKHLKQHEKNKGNASKDSSFSQEDTAREEAKESSDQIDRDEARESEAASRVTAPEEKRILLEDQTDPRNDAEAKSHARSSSRNETLSGDKCPESFANRPELLEHSANFKCNTCEREFDGLEKLRRHRSEHVVEGVLSQQDLEDNIYVSEFEAKIRDNSAAYEKSVELATCRDEANEPDEDSADRTVNSWPVAMAHEDVIDHEDVKDVRLNDDNWTEPKNHEWPSCIATCSSKKLNERNMENHRARTKHVCKLCRGEFTTKDNLRRHVEQEYACRTRTFKCTDCGKIFGNELTLRNHLFATDHKTILQGQPYDPNKRMKRVAAKAAQKIIDKIKTEDDIESSESEENEIKTENHCDEMQTSSQDSKTNSSRWSRQEEDTTRKISTNHTRRRHNYECETCGRKCRSKQSLTKHVSQHRAKESVLEASEKSDRRAVVTSRVPERSNIPQHTSKPASLRRDLKHEDDTDNENSDFESGLDWPVDSHECPTCKKKYSTKKSLLRHQLLHEKPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGEIFENNEILRLHRGRHVDEGLLTEEDLRELEPGTEEGQDGGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSTHLAKHDRTFKKPKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNHLQNTGSRVQTTISTSPVLQEHLLQPIRLHQLSESHEWLDEHEEHHQTQIQLVKSQSIKTITIARTTDDLTGTQMMQQQEILMPLILPLTVTLTDADEEVILPEGTKIYTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100783;
- 90% Identity
- -
- 80% Identity
- -