Oell011890.1
Basic Information
- Insect
- Ophion ellenae
- Gene Symbol
- -
- Assembly
- GCA_963210295.1
- Location
- OY723388.1:31871607-31876884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.042 5.4 8.5 0.3 3 21 8 27 6 28 0.85 2 13 0.63 82 4.8 0.3 1 12 205 216 205 225 0.88 3 13 0.016 2.1 9.8 1.3 1 23 395 417 395 417 0.98 4 13 0.001 0.13 13.6 0.1 2 23 421 442 420 442 0.97 5 13 0.00015 0.019 16.2 3.1 1 23 454 476 454 476 0.98 6 13 0.37 47 5.5 0.3 1 23 495 516 495 516 0.93 7 13 0.00094 0.12 13.7 0.0 2 23 522 543 521 543 0.95 8 13 5.7e-05 0.0074 17.5 4.8 1 23 597 619 597 619 0.99 9 13 2.5e-06 0.00032 21.8 3.7 1 23 625 647 625 647 0.96 10 13 0.00029 0.037 15.3 4.1 1 23 653 675 653 675 0.97 11 13 1.7e-06 0.00022 22.3 0.8 1 23 681 703 681 703 0.98 12 13 0.00011 0.014 16.6 0.2 1 23 707 729 707 729 0.99 13 13 0.00047 0.061 14.6 0.2 1 23 737 759 737 759 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCCGTGAGCCTCGTTTGTCCCATGTGCTGCGGCGAGACGTTCGACAATTCGCAGTCCCTTAAGTATCACTTATTGAGCATGACGGACAATCTCTATTGCCCCAACTGCGCCGAACGTTCTGACTCTGTGGGAGCTCTGATTTTGCATCTGGATTGTTGCGGTGAGAACACCGAACGCATCGACGCGTATCCTTCGAAAGAATACAAAGGTGTATCGGCGGATTCTCAAGCGGATCATCCGAATTGCAGCTTTCTGGCAACAGTGAGCGAAGACGGAGGCATCGTCATGGTCGGCGAGCCTTACTCCGCCGGGGAGGGCAAGGAACACGAAAAGAGTTACAAGCAAGCCGACGATCTGCCCGAGACGGTGAACAAGAGCGAGGCTCGAGTGGCGAGTGCGGGCGAGCCCTGCGACACCGTGAAGGAGGAGACTGAGGAGAACGGTGCGGCGGTAGACAAAGCAGAGCTCCCTACGGAGAACGACAACGCCGAGGCCTCCAGTCCGACGGAAATGGATCCCTTTGAGAATGGTCAGGAAGAGGAGGCGGACGATTCTCCCCTTGTCCAAGTAAAGGAGGAAATACATGAGGTGGAATCGGATGCTCTGTACAGTTGCAGCAGTTGCGGCATGAGTTTCAACAGCGTACTGTCCCACATAAAGGAGTATCACGACGGACAAGAAGTCGTGCTGGAAATGGCCGGACAGCAGATGGACGAGCTTCCGTATGACGTCGAGGAGCAAGACCGCGAGGAAAAAAAGGGAGAAACAGGCACGAGGCGTTTACCGGCCGAGGAGGAAAGTGTAGGCTCGAGCAGCACGCCTGAGAACTCTTCGGGTGTTGTACCTCGACAGCGTCAAACTATGAACACCCTGAGGACCGAAGAGTGCGTCGACAGCGAGGGACGCCACTACACGAGAAAAGTTGTGCAGATAGAGAGATTCTGGGACCGCGGGGCTAGCGAAGCCACAAACGACTCGAGCGCTCAACATACCTCCAAGAGCGCCTCCATGATAGAAAAGTTTTTCTCCAATGCGGAGGGCTTGAAAATTCGCACGAAAAGCCCGAGAAGCGCAACTGTCGCGATCGCGACTATGACTGTGACGACGACCGCCGCTACTAACTCCACCACAACAACGACCTCGTCCTCATGGCAAACAAACACACCGCTCAGAATGTACAGATGCAACAAGTGCCTCGAACAATTTGCAAAACTCGCGGACTTTCGCATTCACGCCTGTATCCACGGCAATAATCAGTGCGATCTGTGCGAGCAGGCCTTCGCGAGTGCCAAAGCGCTGCAATTGCACTCGCGAATACACGAGGCCGAGGCCGAGGAGACCAACGAAACGAATTTCGTGTGTCAAACATGCGGCACCGAATTCACGTCGCACAAAAGCCTCAGATTACATTCGAGAATGCACGCGCCGGTGAGAGCGCGACACGTGGATGCGCCCGAGGGAACCGGTACGGAGAATTTCACGTGCATCGATTGCGGCAAAACGCTTTCCGAGTCTTACAGGAAGGCTCACATGGCGCTGCACAAGGGTGACTCCGTGACGTGTTCCGTGTGCAACCGAAAGTTCGACTCTGCCGACAGTCTGGCTATGCACGCGGCGGTACACGTGGATTTCGTACAATCGCAGCATTCCAAGCAGATCGTGAGTCCATCGGTGGACGAGGAAGGGCTGGAGGACGAGTCGCAGGCGGGTGTAGGTGGTAAGCGTATACGGTTGGGAAAGGAAACGGACAAGAGTGCCGGTGGGGATCCTGCGGAGAAGCCTTATCAGTGCCAGCACTGCGGTAGAAGATTCACGAGACCCCACGAGAAGGTGAAACACGAAAGAATACACACGGGCGAGAAGCCTCACGCTTGCGAGGTTTGCGGCAAGACGTTCCGCGTGTCGTATTGCTTGACGCTCCACATGAGAACCCACACGGGTGTGCGTCCTTACGCGTGTCAGCATTGCGGCAAAAGATTCAAGGCCTCCTCGGTGTACAATCATCATCTATTGACACATGGCGAGGAACGAGCGTACACGTGTCCCTACTGTCCAAAAACGTTCAAGACCCGCGTACAACTGGCTGGCCACAAGAACAGCCACACGAAGCCCTTCCGTTGCACTGAGTGTTCGCGTCCCTTCGCCTCGCTCTACGCTGCTCGGGCTCACATTCAGACTCACAAGAAGGACAACAATCTCAAATTCAGCTGTTACATATGCGGCGCCTCGTACGGACGCGCTTTCGCGCTCAAAGATCATTTGAAGCAGCACGAGAGCAAGGACGCGATCGTACCGCTGCCGGAGCCAGCTCGCGAGGAGGAAGTCACCGACGCTGATGACTTCCTCATCACTCCGGACACCGAGGAATACGAGGAAATCGAGGAGATCGAGGAGATTGAAGAGGAGGAGCACAAACTAGTTGAGGCAGCGGCAGCCGCCGCAGTCAGCCACGCCGATCTCATTCATCACTCGAATTTCGGCGACTGTCACGATCGCCAAGATCACGCGGCAACGCAAAAAGCTCTTCCCGATTGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALILHLDCCGENTERIDAYPSKEYKGVSADSQADHPNCSFLATVSEDGGIVMVGEPYSAGEGKEHEKSYKQADDLPETVNKSEARVASAGEPCDTVKEETEENGAAVDKAELPTENDNAEASSPTEMDPFENGQEEEADDSPLVQVKEEIHEVESDALYSCSSCGMSFNSVLSHIKEYHDGQEVVLEMAGQQMDELPYDVEEQDREEKKGETGTRRLPAEEESVGSSSTPENSSGVVPRQRQTMNTLRTEECVDSEGRHYTRKVVQIERFWDRGASEATNDSSAQHTSKSASMIEKFFSNAEGLKIRTKSPRSATVAIATMTVTTTAATNSTTTTTSSSWQTNTPLRMYRCNKCLEQFAKLADFRIHACIHGNNQCDLCEQAFASAKALQLHSRIHEAEAEETNETNFVCQTCGTEFTSHKSLRLHSRMHAPVRARHVDAPEGTGTENFTCIDCGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHVDFVQSQHSKQIVSPSVDEEGLEDESQAGVGGKRIRLGKETDKSAGGDPAEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHESKDAIVPLPEPAREEEVTDADDFLITPDTEEYEEIEEIEEIEEEEHKLVEAAAAAAVSHADLIHHSNFGDCHDRQDHAATQKALPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100798;
- 90% Identity
- iTF_01103007;
- 80% Identity
- -