Ocos007941.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- -
- Assembly
- GCA_951751655.1
- Location
- OX632358.1:28357518-28361643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.059 6.8 7.9 0.2 3 21 8 27 6 28 0.85 2 13 0.58 67 4.8 0.3 1 12 206 217 206 226 0.88 3 13 0.0063 0.72 11.0 2.0 1 23 398 420 398 420 0.98 4 13 0.00095 0.11 13.5 0.1 2 23 424 445 423 445 0.97 5 13 0.00014 0.016 16.2 3.1 1 23 457 479 457 479 0.98 6 13 0.49 56 5.0 0.3 1 23 498 519 498 519 0.92 7 13 0.00086 0.099 13.7 0.0 2 23 525 546 524 546 0.95 8 13 5.3e-05 0.006 17.5 4.8 1 23 600 622 600 622 0.99 9 13 2.3e-06 0.00026 21.8 3.7 1 23 628 650 628 650 0.96 10 13 0.00026 0.03 15.3 4.1 1 23 656 678 656 678 0.97 11 13 1.6e-06 0.00018 22.3 0.8 1 23 684 706 684 706 0.98 12 13 0.0001 0.012 16.6 0.2 1 23 710 732 710 732 0.99 13 13 0.00043 0.05 14.6 0.2 1 23 740 762 740 762 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCCGTGAGCCTCGTTTGTCCCATGTGCTGCGGCGAGACGTTCGACAATTCGCAGGCCCTTAAGTATCACTTATTGAGCATGACGGACAATCTCTATTGCCCCAACTGCGCCGAACGTTCGGACTCCGTTGGAGCTCTGATTCTGCATTTGGATTGTTGCGGCGAGAACGCCGAGCGCATCGACGTCTATCCTTCGAAAGAATACAAAGGTGCATCGACGGATTCTCAAACGGACCATCCGAATTGCAGCTTCCTGGCCACAGTGAGCGAAGACGGAGGCATCGTCATGGTCGGCGAGCCTTATTCCACCGCGGACGGCAAGGCACACGACGGAAAAAGTTACAAGCAAGCCGACGATCTGCCTGAGATGGTGAGCGAAAGCGAGGCTCGAGTGGCAAGCGCGATAGAGCGCCACGAGACCGTGAAGGAGGAAACTAGCAAGAACGGTGCGGCGGTGGAGGAAGCTGAGCACCCTGCAGCAGACGACAACGCAGAGGCCTCCAGTCTGACGGAAATGGACCCCTTCGAGAACGGTCAAGAGGAGGAGGCGGACGATTCCCCCCTTGTCCAAGTAAAGGAGGAAATACACGAGGTGGAATCGGACGCCCTGTACAGTTGCAGCAGTTGCGGCATGAGTTTCAACAGCGTACTGTCCCACATAAAAGAGTATCACGACGGGCAAGAAGTCGTGCTGGAAATGGCGGGACAGCAGATGGACGAGCTTCCGTATGACGTAGAGGAGCAAGACCGCGAGGAAAGAAAGGTGGTAGCTGGAACGAGGCGTTTGCCGGCCGGGGAGGAAAGTGTAGGCTCGAGTGGCGCACCTGAGAATTCGTCCGGTGTCGCACCACGACAGCGTCAAACCATGAACACCCTGAGGACCGAAGAGTGCGTCGACAGCGAGGGACGCCTCTATACGAGAAAAGTTGTGCAGATCGAGAGATTCTGGGACCGCGGTGCTAGCGAGGCCACGAACAACGCCCAGTCGAATGCTCAACATCCCTCCAAGAGCGCCTCCATGATCGAAAAGTTTTTCTCGAATGCCGAGGGCTTGAAAATTCGCACGAAAAGCCCGAGAAGCGCAACTGTCGCGATCGCCACTATGACTGTGACGACGACCGCCGCTACGAACTCCACCACAGCAACCACCGCATCCTCCTGGCAGACAAACACACCCCTCAGAATGTACAGATGCAACAAGTGCCTCGAACAATTTGCAAAACTCTCGGACTTTCGCATTCACGCCTGTATCCACGGCAATAATCAGTGCGATCTTTGCGAGCAAGCCTTCGCGAGTGCCAAAGCGCTGCAGTTGCACTCGCGAATACACGAGGCTGAGGCCGAGGAGAACAACGAAACGACTTTCGTGTGTCAAACATGCGGCACCGAATTCACGTCGCACAAAAGCCTCAGATTACATTCGAGAATGCACGCGCCGGTGAGAGCGCGACACGTGGACGCACCCGAGGGAACCGGTACGGAAAACTTCACGTGCATCGAATGCGGCAAAACGCTTTCCGAGTCGTACAGGAAGGCTCATATGGCGCTGCACAAGGGCGACTCCGTGACCTGTTCCGTGTGCAACCGGAAGTTCGACTCGGCCGACAGTCTGGCTATGCACGCGGCGGTACACGTGGATTTCGCACAATCGCAGCATGCCAAACAAATCGTGAGTCAATCGGTGGACGAGGAAGGCTTGGAGGAAGAGTCGCAGACGGGTGTAGGTGGTAAACGCATACGGTTGGGAAAGGAAACGGACAAGGGTACCGGCGGGGATCCCGCGGAGAAGCCTTACCAGTGCCAGCACTGCGGTAGAAGGTTTACGAGACCTCACGAGAAGGTGAAACACGAAAGAATACACACTGGCGAAAAGCCTCACGCTTGCGAGGTTTGCGGCAAGACGTTCCGCGTGTCGTATTGCTTGACGCTCCACATGAGAACCCACACGGGTGTGCGTCCTTACGCGTGTCAGCATTGCGGCAAAAGATTCAAGGCCTCCTCGGTGTACAATCATCATCTTTTGACTCATGGGGAGGAACGAGCGTACACGTGTCCCTACTGTCCAAAAACGTTCAAGACTCGCGTCCAACTGGCTGGCCACAAAAACAGCCACACGAAGCCCTTCCGTTGCACCGAGTGCTCGCGTCCTTTCGCCTCGCTCTACGCAGCTCGGGCTCACATTCAGACTCACAAGAAGGACAACAATCTCAAGTTCAGCTGCTACATATGTGGCGCCTCGTACGGGCGCGCTTTCGCGCTCAAAGATCATTTGAAGCAGCACGAGGGCAAGGACGCGGCCGTGCCGCCACCGGAGCCAGCTCGCGAGGAGGAAGTCACCGACGCTGATGACTTCCTCATCACCCCGGACACCGAGGAATACGAAGAAATCGAGGAGATCGAGGAgatcgaggaggaggaggagcacAAATTAGTTGAGGCCGCGGCGGCTGCCGCAGTCAGCCACGCCGATCTCATTCATCACTCGAATTTCGGCGACTGTCACGATCGTCAAGATCACGCGGCAACGCAAAAATCTCTCCCCGATTGCGATCTTCGCCCCTGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQALKYHLLSMTDNLYCPNCAERSDSVGALILHLDCCGENAERIDVYPSKEYKGASTDSQTDHPNCSFLATVSEDGGIVMVGEPYSTADGKAHDGKSYKQADDLPEMVSESEARVASAIERHETVKEETSKNGAAVEEAEHPAADDNAEASSLTEMDPFENGQEEEADDSPLVQVKEEIHEVESDALYSCSSCGMSFNSVLSHIKEYHDGQEVVLEMAGQQMDELPYDVEEQDREERKVVAGTRRLPAGEESVGSSGAPENSSGVAPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGASEATNNAQSNAQHPSKSASMIEKFFSNAEGLKIRTKSPRSATVAIATMTVTTTAATNSTTATTASSWQTNTPLRMYRCNKCLEQFAKLSDFRIHACIHGNNQCDLCEQAFASAKALQLHSRIHEAEAEENNETTFVCQTCGTEFTSHKSLRLHSRMHAPVRARHVDAPEGTGTENFTCIECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHVDFAQSQHAKQIVSQSVDEEGLEEESQTGVGGKRIRLGKETDKGTGGDPAEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHEGKDAAVPPPEPAREEEVTDADDFLITPDTEEYEEIEEIEEIEEEEEHKLVEAAAAAAVSHADLIHHSNFGDCHDRQDHAATQKSLPDCDLRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01102251; iTF_01101535; iTF_01103007;
- 90% Identity
- iTF_01103007;
- 80% Identity
- -