Ocos021188.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- Hr39
- Assembly
- GCA_951751655.1
- Location
- OX632365.1:31026752-31038826[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.026 3.4e+02 0.9 3.0 127 171 17 58 14 79 0.56 2 5 0.15 2e+03 -1.6 5.9 45 166 221 341 200 383 0.70 3 5 2 2.6e+04 -9.3 15.3 55 140 395 451 351 493 0.42 4 5 3.5e-08 0.00047 20.2 0.0 1 21 559 579 559 584 0.92 5 5 8.8e-72 1.2e-67 229.7 0.0 97 408 622 934 590 934 0.79
Sequence Information
- Coding Sequence
- ATGTCGGATCAAAGCGGGCCCGGGGAGGGCCCGGGCTGGTGGCAACCACCGCAATCGTGGAAAACGACGACCAACGTCGTCGCATCAGCCCCACCGaactcctcttcctcgtcgtcgtcgtcctccgcGATCTCGTCGTCGCGCACCCACGAGacgggaaaaaatgtttccgtTACGACAATCAACGTGCCAACGGCCCAGGAGATGCACGACGGTAAAAGCGTGTGCAAGTACCTGGGAGGTCAGAACGGCGTGACCGTATCGGTGGTCTCGAACTGCGTTACCGGCGGAGGAAGCGTAATGGGGGCTGGACCGGGTGGCGCAGGAGGCTGCGCCGGTGGGTCTTCCTCCTGTCCGGAAGCGAGTTGCCTCGAGGACCTCGAGGACAGCGACGGGGAAGTCAGCAAGATCGATTTTCGCGGTGTGAATCTACGAACGAAGAAGAAGCGTGACGGTGCAGCGACGTCTGGTGGCTCGGAGACGGAGTGCCGCGGTGCCGTGGGAGGGGACAATCTCGAGCAGCAACAGCCCGAGAGACCGATGTCATGGGAGGGCGAGTTGTCCGATCAGGAGATGTCTTCGAACACGATTACGAACCAGGATCACGAGGAGACGTCGATGGAGGGTGTACAGGTGTGCGGTGCGAGTCCGGGTCCGCAGGAGCAGAAGTTCCCGATAAAGCCGGAGCCCGATTTCCGGTCGAGTCCGAGTCTGCTGACAGGCTCCCACAACGAGGTCAGCCTCGGGCTGTCGCACGTCCAACAgttgcagcagcagcaacaacagcgtGGCATCGAGGGCCTGGAGGCCCAGCAGCAGAGCGACTTGCCACTACTCGTGGGCAAACTCCTCGGCGGTTACAACAGCTCGACGCCCAATCACAGCCCTATACTCAATCCCCGTCATCATTTGACGAAACACGGCCACACGAGGTCCCAGGTACCTTCGCCGGATTCCGCTATACACTCGGCTTACAGCGTGTTCAGCTCGCCCACCCAGAGCCCACACGCGGCTCGTCACTCGGCACTGGGCCCGGGTAGCCCCGTACCCTCCTCCAGTCTCTCGCTCTCGCGCCACAGCTTCAACAACTCGACTTCCTCGCTATCCCTCTCACTCTCGCACTCCCTCTCCCGCAACAATTCGGACGCCTCCAGCAGCTGCTACAGCTACGGCTCACTGAGCCCGCCCACGCATTCGCCGGTCCAGCAGCCACGGCACGCCCagcatcaccatcatcatcaccagcagcagcagcagcagcagcagcagcatcatCAGCAAGCCCAGCAGCAATTGCCTGCGGCTGGCAGTCCGCTGCATCTAGCCACGAATCCCCACGTCTACGCCAGCCAGGAAATCCCAACGGAGAGTCATCCGGAGGATCAGGAAGACTGCAAGATCCCAACCGCGGCAGCCGCAGCATCCAATACCGGGATTTCGACTCGGCAGCAATTGATCAACAGTCCCTGTCCGATATGCGGCGACAAGATAAGCGGCTTCCACTACGGGATATTCTCGTGCGAGTCCTGCAAAGGATTCTTCAAACGGACCGTCCAGAATCGCAAGAACTACGTGTGCCTCAGAGGCGCCGGATGCCCGGTGACCGTCGCAACGCGCAAGAAGTGTCCGGCTTGCCGATTCGACAAGTGCCTCAACATGGGCATGAAACTCGAGGCTATCAGGGAGGACCGAACGCGCGGGGGAAGAAGCACGTATCAGTGCACCTACACGCTGCCGGCGAATCTCATGGGCGGTGGAGGCGCCGGTGGACCCGCGAACGCAGACAAAATGTCCGGGGGCAATTGCAGCCCGGCACCGCCAGGCGCCGAGCATCATCATTCCGCCAGGCATCATTGGAATCACTCCCACAAGATCCAAGTGGTGCCGCAACTGCTACAGGACATCATGGACGTCGAGCATCTGTGGCACTACAATGATAACGATCGGGTCTCCGGCAGCGCCACGGCCGGACTCCCAACCAACAACGGATCACCACTCTCCAATGAACTGTCCGGATGCCTCGGCTCGGCCGGCCCGCCATCTTGCGCCAACAACGCAACCGGCAACAACGGCAATGCCGAGGCTACTCGACCCCACGATAACAACACCGCCAACTCCAATCCCAACGAGCATCGGCAATCCAACGCGAGCTCGAACGAGCCGAATAACTGCACCGGCGGAGCCTCCAATGGCAATACCACCACGCAGAATCCTGACTTTCTCTCCAATCTGTGCAACATCGCGGATCATCGGCTGTACAAAATCGTCAAGTGGTGCAAGAGTTTGCCTCTGTTCAAAAATATCTCGATAGACGATCAGATATGCTTGCTCATCAATTCATGGTGCGAATTGTTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACACCCGGCGAGATCAGAGTTTCCCTCGGCAAATCAATCACACTCGAGCAAGCTAGACAACTCGGCTTGGCCACCTGCATCGAGAGAATGCTCGCCTTCACGAATAATCTCAGGCGACTCAGGGTCGATCAGTACGAGTACGTCGCGATGAAGGTCATCGTTCTTCTGACTTCGGACACGAGCGAGCTCAAGGAACCCGAAAAAGTCAGAGCATCCCAGGAGAAAGCTCTTCAGGCCCTACAGCAATACACGATCGCGAGGTATCCCGAGATGCCGGCAAAATTCGGCGAGCTTTTGCTTCGAATACCGGATCTTCAGAGAACTTGTCAGGCCGGTAAAGAGCTGCTCAGTGCGAAACGGGCCGAGGGAGAGGGCAGCTCGTTCAATCTACTCATGGAACTGCTTAGAGGAGATCATTGA
- Protein Sequence
- MSDQSGPGEGPGWWQPPQSWKTTTNVVASAPPNSSSSSSSSSAISSSRTHETGKNVSVTTINVPTAQEMHDGKSVCKYLGGQNGVTVSVVSNCVTGGGSVMGAGPGGAGGCAGGSSSCPEASCLEDLEDSDGEVSKIDFRGVNLRTKKKRDGAATSGGSETECRGAVGGDNLEQQQPERPMSWEGELSDQEMSSNTITNQDHEETSMEGVQVCGASPGPQEQKFPIKPEPDFRSSPSLLTGSHNEVSLGLSHVQQLQQQQQQRGIEGLEAQQQSDLPLLVGKLLGGYNSSTPNHSPILNPRHHLTKHGHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGPGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHAQHHHHHHQQQQQQQQQHHQQAQQQLPAAGSPLHLATNPHVYASQEIPTESHPEDQEDCKIPTAAAAASNTGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLMGGGGAGGPANADKMSGGNCSPAPPGAEHHHSARHHWNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRVSGSATAGLPTNNGSPLSNELSGCLGSAGPPSCANNATGNNGNAEATRPHDNNTANSNPNEHRQSNASSNEPNNCTGGASNGNTTTQNPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059522;
- 90% Identity
- iTF_01102090;
- 80% Identity
- iTF_01100618;