Ocos022964.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- lola
- Assembly
- GCA_951751655.1
- Location
- OX632367.1:13610015-13619119[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-16 3.2e-13 49.7 0.0 2 42 413 454 412 467 0.95
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTTCTGTTTACGATGGAACAATCATCAGCCAAATTTCATATCCGTCTTCTCGTCGCTGCTGAACAATGAGACTCTGGTGGACGTTACTTTGGCCGCCGAGGGTCGTCATCTCCAAGCTCACAAAGTCGTACTATCGGCGTGCAGCACATACTTTCAGTCCCTCTTCACCGTCAATCCTTGTCAGCATCCTATCGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTTGATTTCATGTATTACGGCGAAGTCAATGTTTCCCAGGATCAATTGCCCTCGATAATCAAGACAGCGGAAAGTTTGAAGATCAAGGGCCTCGCGGAGATGCACACGGCCTCTCTGACAAAGTGGCCAAGCGAAACCGGTGGCGCAGATTGCGGAGAGTCCTGTTCGCCGAGTCCCTCGCCATTGTCGCCCTCCTTCCGTAGAAAACGCTTGCGCAAGGGTTCGACGGGCTCGACTTCCGGTGGATCGGCCGACAAGACGGAGGAAATAAACGAGATCACACTCGTCGCCACGAACATAGTTAAACCGGAGCCCCACATTGTACCCCAGGACGGAGCAGGCGACGCCCTCAGGCGCCCCGTCAACACCACCACCGACACCCAAGGCAGCATCGACGAAGATCAAATATCCATCATGAGCAACATGGAGAGCAGCACGACGACGACGCCCGCTCAGAGCGAAGGTTCTTTGCAGGAAGTCGGCCATCACGCCGGTAACATCGGCCACGGCTCCCTGTCTCATCCGCCGAGCCACCAAGGATTGCAATGGACAATAATGGAGCATACGTATCCGCGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGGTCCAAGCTTCGTCGGCATTCACGACACCCGAAATAGGCCCAGCCTCGAGCCTCAGCGAGCATCAGTATCAAtcgggtggtggtggtggtggcggcggcggcggcggcggtggcggcggcacGAGTACGACAGCGTCATCTAACTGCGGGCTGACCAACTACCCGAACTCGTCGATGCAGCACGGCTCGAACACGGATGGCGCGGGTGCTGCTGGTGCTGCTGCtggcggtggcggtggcggtggAAGCGGTAACGGTGGCGGAGGTAACGGACAGAGCGGTGGCCTATCGCCGGCCCAGTGCTCGAGCAATTGTCAGAGTCCTTGCGCCAGTCCGCAAGCAACTATAAAGAGAAAAAGATCGACGAATCCCCAAGCGGACGAAAATTTTATACGAGCCCTGGAGGCGGTGCGTTACGGTGGTATAGGATTTTGTAAAGCTGCCCGAATGTTCGGCGTTAACAATCGGACCTTGTGGCTCGAGTACAAAAAACGGGGCTACCCGAACAATCGTCCGAGCTTGAAGTCGCGGGTGAAGCAGGAATCGAGCGCGTCaccgccgccaccaccaccaccggcAACCTCGTCGCAGACGGTCGATTCGCAGAGTCCGACACCTATGGGACCACCGACGACGCCCCACAGTACACACAACACGCATCCGAGCCACACGATGCTCACCGCTCACAGTCCTCACCCGATGCTCTCCGGATACATCGACAACAGACACTCCGATTATACCCTACCGAGCTCGACGATGCCGATCAACCTGCACGGCGTTAATTACAACTCCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSETGGADCGESCSPSPSPLSPSFRRKRLRKGSTGSTSGGSADKTEEINEITLVATNIVKPEPHIVPQDGAGDALRRPVNTTTDTQGSIDEDQISIMSNMESSTTTTPAQSEGSLQEVGHHAGNIGHGSLSHPPSHQGLQWTIMEHTYPRFALSSCQTNLSVQASSAFTTPEIGPASSLSEHQYQSGGGGGGGGGGGGGGGTSTTASSNCGLTNYPNSSMQHGSNTDGAGAAGAAAGGGGGGGSGNGGGGNGQSGGLSPAQCSSNCQSPCASPQATIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQESSASPPPPPPPATSSQTVDSQSPTPMGPPTTPHSTHNTHPSHTMLTAHSPHPMLSGYIDNRHSDYTLPSSTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629212;
- 90% Identity
- iTF_01101239;
- 80% Identity
- iTF_01100725;