Ocos023287.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- lov
- Assembly
- GCA_951751655.1
- Location
- OX632367.1:20827326-20831856[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-05 0.081 13.2 0.0 2 38 198 234 197 240 0.84 2 4 6e-11 9.3e-08 32.2 0.0 5 39 251 284 248 291 0.85 3 4 0.00057 0.88 9.9 0.0 6 34 304 331 299 337 0.83 4 4 3.2e-12 5e-09 36.3 0.0 4 39 362 397 346 402 0.94
Sequence Information
- Coding Sequence
- ATGTCAGGCACAATAATAGAGAGCACGAGCGAGCGTGAACACGAggaaacttattattacaaatGGACGAATCATCAGAGTCACTTGTCGGACGTCGTTCGACAGCTTTTGGAGGAGGAATGCATGGTCGACGTGACTCTTGTCGCGGACGGGGAACGCATACAAGCCCATCGTATTGTTCTGTGCTCTTGCAGCACTTTGTTTCAAGAGATCTTTAGCCAGGCTAGCGGCGAACCTGCGACTATTATATTGACCGACATATCAGCGCAGGATGTCAGATCCATCGTGGAATTCAGCTACCACGGCGAAGTCAGAATTCCTGTTGAGAATATCAACAACTTACTGGAGGCTGCCCATTCTCTGAGAATTTGCGGCCTCATGGAGATCGACGGACTGGACGAGAACGACGCGATAATAAGCGTGAAAGAGTCGAAGGACGAGAACAGCGAGTCTTTCGAGGAACTCGAGGAATGCGTGAACGAGGCGCCGGAGATTCCCGAGGACTCGTCGAGTGACGGTCAGCGAAAGAACCAAGAGTCAAGCGGTAAGGGCAAGAGGCGCAGGAAGGATCCGTTGAAACGCGAATACGACGACGAAATGCTCGCTTCGGCGATAAACGATCTGAAATCGGGCCAAACTCTCGTGGAGGCTTCGATAAAGAACAACGTGCCGCGCTCGACCCTCTACATGAGAGCCAAGGCACTCGGCATTCAATTGAACGCGTCGAGAAACGAGTATCCCGCTGAGTGCATGAAAGCCGCGATCGACGCGGTGATAGAGGGCTCGAGTTTGCAACACGCGGCGGACAGATTTTTCATACCGAAAACCGTGCTCTGGCGACGCATACAAAAGGAGGGCTATCAAATATTGCGCGCCGAGGTGAAGCGCTCCTACGGGAGGGAAAATCGAGAAGCCGCCGTCAAAGCGCTCCAACGAGGCGAAAATTTGACCAAAGTCGCACAAAAATTTCAGATACCAAAGACGACGTTGTTTCGCGAGAAAGTGAGGCTGGTCGACGAGGGAAAATTGCCGGAATCCTTCTGGAAGAAACGCAAGACCGAGAACGAGGAACGGAAGAAGTCTCGTCTGGAGGAGGCGGTGGCGGTTTGCAAAGAGGGCAAAATGTCACAAGCAGCGGCGGCCATGAAGTACCAAATACCGAAAACGACGATATGGCGAAGGTTGCAACAGGAAGGAAAGACTACCGGACGCGAGACTAATGCGCGAACGGTCGAACGCTCGTTCGACAACGACGACAGCTCCGTTAAGAACGAGCAAGAAAATACCGAATTTGCTTTTTGCGAGGTATCCACGGAAATTCCGATAACGTACATAGATCAGAACCTCGGAGCTGATTCCGTTATAATATTGACAACGGAAGACGTGGATGGCCTGAATCTGGACGAGAGTAGACAAATAATCGTAAACCAGGATTCTGGACAGGAGTATGTGCGATGCGCTCTCGACATATCCGACAACACGGGAAGTTCGGAGTACCAGCCGGCGGAGAGCTAG
- Protein Sequence
- MSGTIIESTSEREHEETYYYKWTNHQSHLSDVVRQLLEEECMVDVTLVADGERIQAHRIVLCSCSTLFQEIFSQASGEPATIILTDISAQDVRSIVEFSYHGEVRIPVENINNLLEAAHSLRICGLMEIDGLDENDAIISVKESKDENSESFEELEECVNEAPEIPEDSSSDGQRKNQESSGKGKRRRKDPLKREYDDEMLASAINDLKSGQTLVEASIKNNVPRSTLYMRAKALGIQLNASRNEYPAECMKAAIDAVIEGSSLQHAADRFFIPKTVLWRRIQKEGYQILRAEVKRSYGRENREAAVKALQRGENLTKVAQKFQIPKTTLFREKVRLVDEGKLPESFWKKRKTENEERKKSRLEEAVAVCKEGKMSQAAAAMKYQIPKTTIWRRLQQEGKTTGRETNARTVERSFDNDDSSVKNEQENTEFAFCEVSTEIPITYIDQNLGADSVIILTTEDVDGLNLDESRQIIVNQDSGQEYVRCALDISDNTGSSEYQPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262572;
- 90% Identity
- iTF_01102940;
- 80% Identity
- iTF_01100739;