Obrm005956.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- sip1
- Assembly
- GCA_001266575.1
- Location
- JTDY01001543.1:21671-57433[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-17 2.1e-13 50.4 3.8 84 168 383 462 353 465 0.84 2 2 0.00064 5.4 6.4 0.1 243 275 465 497 461 497 0.92
Sequence Information
- Coding Sequence
- ATGATATCAAGGACAGTAATACTGTTTTGCGCTGTTTTGGTGTTAAATGTGTGTGTGGACGGGTTTGCAGTGCCCTTCGAAGGGTTGTACCGGCTGGACGTAGTGCATTACAATGACTTTCATGCGAGATTCGAAGAAACATCTCTAGCGACCCCAACCTGTCGGTTCAACAACAACTCGTGTCTCGGCGGCTTCCCTCGACTCTATCACGAGATCCAAGTGCTGCTGGATGAGAAACCGGATGCCATACTCCTGAACGCAGGAGACAGCTTCCAGGGGACTCATTGGTATACCCTGCTGAAGTGGAACGTTACTCAGGAGTTCATGAATCTGCTGCCTCATGATGCTCACGTAAGATTCTGCTGTAAAATGTCTGACGACGAGGTTATTCGCTTCGAAATCACCGACCATGATTTGGACAAtgaattcaatttcaataggCCCCGAGGGAAAAACAAGAAGGAGCATCAGATATACGGTATGTGGGCCAAAGACAGTGATGAAGAGGACAATGAGGATACTATCCGGCAGAGGAGCCGGAAGCCCAAAGACTACTCGGCGCCCATTGGCTTTGTGATGGAACTAGAATCAACTGAAGCCTCCACCTCTCGTCCCAAGTTCACTCCAGACAGTTCCGATGAGGACGATAAACCAAGCATGCCGGCCGAGAGCGAGACAGCAGGGATCCGGAGAAAGGGACAGGGCATGCGGTCAGCTAACTTAGGCGGCAATGTGGGGAACTGGGAGAAGCATACTAAGGGTATCGGAGCTAAACTACTCTTGCAGGAGCAAGAGAAAGGGGTCTTAGAAAAGTCCTACAATTGGAAGAAATCCCACAAAGGACGCTACTTCTACCGAGACTCAGCCGATGTCATACAAGAGGGACATAATCCAAAGCGCTCAAGCTCATTAACTAATTTACAATGTGGGTTTCAAGCCACAATCGTGAAAGCTCACAAACAATTACAATGTGGTTTTCAGGACATAATCCAAAACGCGCGAGAGCTGAACGCCGCAGAGGATGAGATCGTAGTCCTGGAGCGCGACCTGGCGGAGTGCGACCTGAACCTGCTCGAGCAAGACAACATCATCGCCAAGGTGCAAGCCATCCTGCAACGAGCCCCCGAGGAGCCCATCCCCACCTTCCTCAAGTGGAGGAAGCTGCTGACAGAAGAGGCCTACACCAGCTTGCTAGTTTGGAACCCGCGAGTGCCCGAGCCGATGCTGCGCGCAGTGCGCGCGTGGGGCGCGGCGTGCCCGCCGTGGGTGGCGCGCGAGCTGATCGCGCGCTGCGTTGTGCCGCGCGTGCTCGCCGCCGTCAGGAACTGGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGTTGCCGTGGCATGAGCTCGCAGCTGCGTGGCTCTGGTGCGTTGATTGGTTGGACCTGCTAGGGGCTCCCACTGTAGCGGCCATAGCAAGCCGGGCACTCCTACCTCGCTGGCTAGCCGCGCTAGCTGCCTGGCTCAACTCGAACCCCGCACATGCAACGGTGCTCAACTCATATACGGAGTTCAAGAAACTGTTCCCTGAAGAAGTCCTCAGAGAGCCGGTGGTCCGTGACTCGTTCCGCAAAGCACTGGACATGATGAACCGAAGCACTGACATCGATACGGTGGAGGCCCCGCCGCCGCCACGCTTCACGCCCGTCGACATAAAGGAAACATCTAGAATCGCAGACGCATTGGCATCTGCTACTCAACAAAAATCATTCTCGGAACTGCTAGAATCAAGATGCGTAGAAAAGGGTATCACTTTTGTGCCCTTGGTTGGAAAGAATAGGGAAGGAAGACCTATTTATAAGATAGGGGATAAGCAGTGCTATGTTATAAGGAATGTGATTATGTATTCAGATGACGCGGGACGAAATTTTGCGCCGATTAGTATGGACCGACTGTTGAAAATGAGATCCTTAAAGCTATTCTGTTGTCCCGTTTACCTAATTTTTCCTATTCAGGTATCAACTAAAATGACAGAACTACTCTTAAATCATAATATGACAGGACTAAAATTAGTT
- Protein Sequence
- MISRTVILFCAVLVLNVCVDGFAVPFEGLYRLDVVHYNDFHARFEETSLATPTCRFNNNSCLGGFPRLYHEIQVLLDEKPDAILLNAGDSFQGTHWYTLLKWNVTQEFMNLLPHDAHVRFCCKMSDDEVIRFEITDHDLDNEFNFNRPRGKNKKEHQIYGMWAKDSDEEDNEDTIRQRSRKPKDYSAPIGFVMELESTEASTSRPKFTPDSSDEDDKPSMPAESETAGIRRKGQGMRSANLGGNVGNWEKHTKGIGAKLLLQEQEKGVLEKSYNWKKSHKGRYFYRDSADVIQEGHNPKRSSSLTNLQCGFQATIVKAHKQLQCGFQDIIQNARELNAAEDEIVVLERDLAECDLNLLEQDNIIAKVQAILQRAPEEPIPTFLKWRKLLTEEAYTSLLVWNPRVPEPMLRAVRAWGAACPPWVARELIARCVVPRVLAAVRNWDPTHDTQPVHCWVLPWHELAAAWLWCVDWLDLLGAPTVAAIASRALLPRWLAALAAWLNSNPAHATVLNSYTEFKKLFPEEVLREPVVRDSFRKALDMMNRSTDIDTVEAPPPPRFTPVDIKETSRIADALASATQQKSFSELLESRCVEKGITFVPLVGKNREGRPIYKIGDKQCYVIRNVIMYSDDAGRNFAPISMDRLLKMRSLKLFCCPVYLIFPIQVSTKMTELLLNHNMTGLKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -