Obir008603.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- bab2
- Assembly
- GCA_003672135.1
- Location
- NC:7700621-7748327[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-13 5.6e-10 38.1 0.0 1 39 381 420 381 424 0.90 2 4 2.3e-12 2.4e-09 36.1 0.1 2 39 436 473 435 477 0.93 3 4 4.3e-19 4.4e-16 57.7 0.0 4 45 493 535 490 535 0.96 4 4 7.8e-19 8.1e-16 56.8 0.1 1 42 542 584 542 585 0.97
Sequence Information
- Coding Sequence
- ATGGTAAGCGGCGGAATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTATCAGTCGAATATGACGTCGGTGTTTCATCAACTCCTGCAGACTGAGGCCTTCGTCGACGTCACTCTGGCCTGCAACGAGGCCTCGTTAAAGGCGCACAAGGTCGTGTTATCGGCTTGCAGTTCCTACTTTCAGAAGCTACTACTGTCGAATCCCTGTAAACACCCAACGATTATTATGCCGCAGGACGTGTGCTTCAACGACCTTAAGTTCATCATCGAGTTCGTCTACCGCGGTGAGATAGACGTCTCACAAGCGGAGCTTCAGTCACTGTTGAAAACGGCCGATCAGTTGAAAATCAAGGGCCTCTGCGAAGTGCCAGAAAACAGGGACGGTCCACCACCCGTCAGTTTGAGTTCACCGCCAAGAGAATCGGGTACTCCGAGGTTAAACTACACAAAACTGAAGAAGCACCATCAGCGGTACAAACGGTCCAGAATCGAGCGGCCTACGTTCGAGCCACGCGCTACCGATCCGAGACATTACGAGCGTTAcaaagaggaagaggggaACAACGATTACAGTCGCAATAATAAAGAGAATCACCTGGACTGGCAAGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtagCATTAGAAACTTGCCAACgtaacaacaataataataacaacaacaacGGTAACGGGACGAACAATAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCATCATCCGGATCCTGGAGAGGTCGATTTGCCCCCTGAGACCCAACCTACTCCGCCCAGCGCCACCTTGGTCGGCACCACTATCACCCATCTGAGAGATCCGGATCATCATTCTACAGAGATACAAAATTGCGACAGCGTTAAGATCAAGTTCGAGACGTTGCACACGATGGACTCGTCAGACACGATCGACATAGATAGCCACATGTCAGATCGAGCGAGCGTGAGCTCGAAGAACGCCGCCGATAGTGACAACATGATGATGATAACGCCGGAGCTTCTCGGATTGATGCCGTCGGGAAGCTCCGGTCATTCAGACTCCGGCGAGAACAACTCGAGAGGACAGTCAAGCTCGCATCATCATGGCTCAAAATCGTGGACGCAAGAGGACATGGACGCAGCTTTGGACGCATTAAGAAATCATGATATGAGTCTGACAAAAGCTTCGTCAACATTCGGTATTCCGTCAACTACTCTGTGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGATGGTCCGACGAAATCGTGGAGCGATGAAAGTCTGAACAACGCTTTAGAAGCGTTACGCACTGGCACTATCTCGGCTAATAAAGCATCTAAAGCCTTCGGTATACCTTCCAGCACGTTGTACAAGATTGCCAGGAGGGAAGGCATTAAACTAGCCGCGCCTTTTAACTCAACCCCTACGACATGGTCGTCCGCTGATTTGGATCGTGCTTTAGAAGCGATAAGATCCGGTCAGATGTCTGTACAAAGAGCATCGACAGAATTTGGTATACCCACCGGTACTTTGTACGGAAGATGCAAGCGGGAGGGAATCGAGCTTAGCAGGAGCAATCCTACTCCATGGAGCGAAGACGCTATGACTGAGGCTATCGAGGCCGTTAGATTAGGGCATATGAGCATCAATCAAGCAGCAATCCATTACAACTTACCATATTCCTCGCTGTACGGGCGTTTCAAAAGAGGCAAATACGAAGAACCAGTCGTCGGTGAGATTTCACAGGACGGCAGCAATCCACATTTCCATCAGAGTCCCAACCAGAATCACTCGTCCGCCCTCCCGGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MVSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRSRIERPTFEPRATDPRHYERYKEEEGNNDYSRNNKENHLDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGHSDSGENNSRGQSSSHHHGSKSWTQEDMDAALDALRNHDMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIKLAAPFNSTPTTWSSADLDRALEAIRSGQMSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEAIEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGEISQDGSNPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_01099336;