Otau011159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Onthophagus taurus
Gene Symbol
-
Assembly
GCA_000648695.2
Location
NW:25404-49857[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.022 1.7 8.9 1.2 2 23 139 160 138 160 0.96
2 16 0.00062 0.047 13.8 1.5 1 23 165 187 165 187 0.98
3 16 0.00013 0.0098 15.9 1.2 1 23 193 215 193 215 0.97
4 16 0.00018 0.013 15.5 0.2 1 21 221 241 221 242 0.94
5 16 0.0081 0.62 10.3 1.3 1 23 249 271 249 271 0.97
6 16 1.1e-05 0.0008 19.4 0.0 1 23 410 432 410 432 0.98
7 16 8.8e-06 0.00067 19.6 6.6 1 23 432 454 432 454 0.98
8 16 3.5e-07 2.7e-05 24.0 1.2 1 23 460 482 460 482 0.98
9 16 1.4e-06 0.00011 22.1 2.1 1 23 488 511 488 511 0.96
10 16 0.0037 0.28 11.4 1.6 1 23 524 546 524 546 0.97
11 16 2.4e-06 0.00018 21.4 4.7 1 23 552 574 552 574 0.98
12 16 6e-07 4.6e-05 23.3 0.5 1 23 581 603 581 603 0.96
13 16 5e-05 0.0038 17.2 3.0 1 23 609 631 609 631 0.98
14 16 5.8e-07 4.4e-05 23.3 0.6 3 23 639 659 637 659 0.96
15 16 1.8e-05 0.0013 18.7 0.1 1 23 665 687 665 687 0.99
16 16 0.057 4.4 7.6 0.5 1 23 692 715 692 715 0.96

Sequence Information

Coding Sequence
atggaaTCGAAATACACCGATTTAACGAGGTTATGTCGAACTTGTAAAATGGAATCTTCCGATATGCGGCCCCTGCATACGCGAGACACTGACAATGGCACAGATAATCCTAGAGTAGATGACATGCTAATGTTACTCACAAATATAAAGGTTGAAGAATCGGATAAACTCCCACATTTAATATGCAATTATTGCGTGACACAACTAAAAGCGGccgttaattttaaacaactttgcGAAGCCacagatttattttataaagatttattaaatctcAATATTGAgcataaaatcgaaatatacGAAGATATGATACTTTCAGAGGATACATCAATAAAACAGGGAGGAGATAacgataatttaaataatcgcGACTACATCCAAGTTCTTGATGATGAgaacatattaattttaacctgtggggaatgtttaaaagttttcacAACAATCGAGGGTTTAAAATGCCATAAACGTATACATTCTAAAGATccatttaaatgtaaatattgtGGCAGGGAATATTTAAgcttaaaaagtttaaatcgCCACGAATTGATGCACACAAAACGAAAATTACATGTTtgtaaaatatgtaatataacTATATCACGAGATACtaatttaaagaaacattTAATGGTTCATTTGAAAGATAGGCCATATCAATGTGAGGGCTGTACTAAAGGTTTTAATCGTTCTGAAGATTTagatattcataaaaataaatgtaaaggGCAAAAAATTTACACTTGTAATATATGTGCGAAAGGTTTTAATCGAGAAGATAGTTGTATGGTGCATGAAAAAATGCATGAAGATCAACAATACGTTCTTCCAACATTAGAAAGTTTAGATAATATCCAAGAATTCTATTATGAAGTTGATCTAAACgacgaaaatattaatttaattaattcagagaTTTCTGATGTTGATGTTGAAGAAGAATTCCAACCAGATATCGCTTGCGAAGTTTTATTTACCCCAACAGTTGATAAAAATCCTATCATAGATATTAAATCAGAAATTTATGCCGAAGAAGATCCCCTGGAAATCATGGAAGAAAAAGCTAGGATTGAAGAAGAAATGTATAATGGAAATAGTGATAGCGCTGAATCTGAATACTTTCCTTTAcgtataaaaaagaaaaaaggaagGCCAAGAAAAAAACCGTTAAAAAGATTAAGAGGTagaccaaaaaaattaaaatcaaacgaAAATAATGAACACACTTGCCCAGATTGTAAACAAGTTTTCCCAGAATTATCACTTTTAGAGGATCACATGATTAAACACGAATGCACTTATTGCAAAAAACGATTCGCGAGATTTACTCACTTAAGGAGACACATTTTAACACATTCAGAAAGTAAACCATACCCTTGTGCACAATGTGAAAAATCATTCACAAGATTAGATCATCTTCAACAACACATTAAAGTTCATGACCCCGAATATAGGCATTCCTGTGAAAGTTGTggtttaacattttcaaggCAAAGTCAACTTTCCAGGCATATGGTCACTCAACACAACGCTGAGCCTTCAATGCAAGAcgtggaaaaaaaattttattgcaatatttgTTTGAAAGGATTCACAACTGAAAAATATCGAAACGTTCATGTGAAAAATCACGAAGCTGGGAGGCCGTTTCAGTGTAATATTTGCAAGAAaacttttactttaaaatcgCATCTTAATGAACATATAAAATTTCATAGTGAGAGttcgaaaaagtttttatgcTCGGAATGTGGGCAGAGATTCATTCGAAacgattatttaattattcatatgAGGAGGCATCGTGGTGAGAAaccttttaaatgtaaattttgtggAAAGGGATTTCCTCGGACTACAGATCTCCATGTACATGAAAGATATCATACTGGCGAAAAAACTCATTTGTGTGGTGTATGTGGACGCGGTTTCGGAAGaGCTTATAATTTAAGGGTTCATATGCGAACTCATACAGGTGAAAAACCTTATCAATGTACATATTGTCCTGCTGCTTTCGCCCAAGGAAACGATTTAAAGGCGCACGTTCGAAGACATACAGGTGAACGATTTCAGTGTGATCTTTGTGAGGAAACATTTCTAATGggttatttattaacacaacATAAAAGATCCGTCCATGGTTTAAATATAGTAGGAAATGTACGACGATTAACACCtatgaaaaaatatgatatcTCCAGTGAAGAACCAGAAACTGTAAGTTTACCTGAACCGGTTATACTATCAGCAGCTTTACGTGGGACTCGATTGCAAACAGAAGTAAAAATGGAGTAA
Protein Sequence
MESKYTDLTRLCRTCKMESSDMRPLHTRDTDNGTDNPRVDDMLMLLTNIKVEESDKLPHLICNYCVTQLKAAVNFKQLCEATDLFYKDLLNLNIEHKIEIYEDMILSEDTSIKQGGDNDNLNNRDYIQVLDDENILILTCGECLKVFTTIEGLKCHKRIHSKDPFKCKYCGREYLSLKSLNRHELMHTKRKLHVCKICNITISRDTNLKKHLMVHLKDRPYQCEGCTKGFNRSEDLDIHKNKCKGQKIYTCNICAKGFNREDSCMVHEKMHEDQQYVLPTLESLDNIQEFYYEVDLNDENINLINSEISDVDVEEEFQPDIACEVLFTPTVDKNPIIDIKSEIYAEEDPLEIMEEKARIEEEMYNGNSDSAESEYFPLRIKKKKGRPRKKPLKRLRGRPKKLKSNENNEHTCPDCKQVFPELSLLEDHMIKHECTYCKKRFARFTHLRRHILTHSESKPYPCAQCEKSFTRLDHLQQHIKVHDPEYRHSCESCGLTFSRQSQLSRHMVTQHNAEPSMQDVEKKFYCNICLKGFTTEKYRNVHVKNHEAGRPFQCNICKKTFTLKSHLNEHIKFHSESSKKFLCSECGQRFIRNDYLIIHMRRHRGEKPFKCKFCGKGFPRTTDLHVHERYHTGEKTHLCGVCGRGFGRAYNLRVHMRTHTGEKPYQCTYCPAAFAQGNDLKAHVRRHTGERFQCDLCEETFLMGYLLTQHKRSVHGLNIVGNVRRLTPMKKYDISSEEPETVSLPEPVILSAALRGTRLQTEVKME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01097790;
90% Identity
iTF_01097790;
80% Identity
-