Basic Information

Gene Symbol
TRERF1
Assembly
GCA_000648695.2
Location
NW:109965-211510[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-12 5.8e-09 35.6 0.0 2 46 1228 1272 1227 1272 0.96

Sequence Information

Coding Sequence
ATGACAGCAGTGAATGCGGGTGTCCACGAAATTACAGGTGTTCGCCTACCCCTCCAACACTATACCGGAAGCCATGCTGTGTTCATGTACAGTACAGCCAGTGACGGCAACGTCACCCTTCAATTGAAAGAACCTGATGACTTGGATAGGACAAGTCTTGCGGCCGTTCTTGCCAGGCTGCAAGATGACtcatctttttcaatttcttatcAAGATGCCGATATGTTGTCCGATGGTAGCATCGATGTCTTGCTCGGAACCGGTCCTGGTAGTCAACAAGgTGGGGGTGAGTCAGTTACGACGGCACCCTTTGACCTCTTCGACTCGTCCAACGGGCCCGACCTGACGTTGTCCCCGCAGACGTTCACCAACTCCACCGAGGCTTTCATCAACGACAACTCCAACAGTCTGGGAGTCCCTGCGGACAACGAAGCAGTTTCTTCTACGGACGAGAAAAAGCCGTCAAGTCTCAACTCGGAAGCGTCCAAGTTAACGGTAAAAAGACCGCGACCGAAAGCAGTATCACCAAATCGACAAGGACCTCAACAATGTCAGGTGTGCTCAAAAGTCTTCGGTAACGCGTCAGCCCTCGCCAAGCACAAGCTTACACACAGCGACGAACGGAAATACATCTGCAACATGTGCGGAAAAGCGTTCAAGCGGCAGGATCACCTGAATGGTCACATGCTCACCCATAGGAACAAAAAACCGTACGAGTGTAAAGCGGAGGGATGCGGAAAAAGTTATTGCGATGCGCGGTCATTGAGAAGACACACTGAAAATCATCATAGCAGTGGGTCTTCTAATGGAGCCACCACAATGTCTCCAGCTCAAGGAGCAGCTTCCGGTGATGCAGCTTCGCCTCATGGGTCAAGCTGTATTCAATATGCACCTCCACCAACGACATCGGTTACATCAACAACCACCACTACGACTACTTCTTTAGGAAATAGTGGATCAAGTAATTCGACAGGAAAAAGTCAGTTACAACAACTTTTAGCAACAGAACCTGTTAAGGGAGGTGGTGCCAACGACGGCCTAACGAAGCAGCTGGACCTGATCCATCAAATAATGGAGCAGACGCAGAGACAATCACATTCGGTCACCAccaaaactaatttaaaatccAACTCGAAATCCAACACTAAGAGCTCTAGCAGTAAAGTACAAAAACCTTTATCGAGTCAAAATGCGTCAATCAAACCATCATCTTCTAGTCCACAATCCAAAGTTACCAGTACAACCTCCCCAGGGAACAACGCCAGTTCCTCTGGGAAAGATCAAAAGCCTGTTGAGTGCAATTTGTGCCatagaaaatttaagaatataCCTGCTTTAAACGGTCACATGAGACTTCATGgtggatattttaaaaagGATACCgataacaaaaagaatgaaaagaaAGATCCAAACGGCCCACCTCTACAAACAGCCAGTGTGAGTGTACGGGCTCTCATAGAAGAAAAGATAATAAGTAAAAGAAACATAAGTTCCTCTTCGGATGATACATCATCACCAGTTAGGACGTCAGCTCCGCCTCTATTTCCTCTAACAGTCCATTCCCCAGTCACATCTGGAACCACATCAGAGGCGGATTCATCGAAAACTTCTTTTGCAGTTCCCGCGCCTCCTCAATTGAGTACGGTTGTAGAAAAAAGTAGAAGACATTCCGATGCGGAAACCTTCACGGTCCCCAGGACTCCGCAACAGGACGCCGATACTCTGGCGGATCTGATACTcaacaaaaaggaaaaagttaCCGTTAAAAGAACCACTTCCGATCCAGGCCAATCAACTCCTCAAATAATCCAATTCCAATCTGGCGAAGCGTTTACTTTGGGGGTCACCTATCAACCGGATGACGGTTATCTTTCGCCGAGCCTCCACGATGAAGTTTTCACCCAAGTACAAGATACAATGCTCCTACAAGGTGTCGATACCCAACAACTCGCTTCcattcaatttcaaaacatcGAAACTGATAGTCTTCTTCAAGATCACCCGGAGCAACAACTTCAAGAAATTTCGTTGGATGATTACAATCTACCTGACAGTGTAACGGATTCGCCTTCTTACCAATCAACGCAATCGGTGACCCATCAGGATTTAAGGGCGGTGTTGGATTCGCCACTTCCGGAAAGCTTGGCAGAGTTCAGTACTTTTCATACCACCGGAAGCTTGGATATTCCATCGCCGAGTTACCAAAGATCTCCAGCTCAATTCTCAAATTCACCACATCCTTCCATGGCGGCTCAAAGTCCTTTGCAATCCCCTCTGGTGAGACACGATTCACCAGCTTATACATATCCAACACCACCAGCGAGTCATGAGGGGCAAAGTCCTTGTTTTGGACAGAACACGATTCTTCCAATGGTTTCTCCAAAACAAGAGTACATCAAAGACATCGATCAAAACAATCAACTATTAACAACGGATTTCTTTTCCACGACAATGTCCAGTTCGGCAGCCGTTGAAGAGGCGTTAGAAGAAGTTCTTCCTGGTGAAAGTATAGCAGCTGATGATTTGTACTCGTCTCTATCAAATTCACCTCCACCTCAATCTCCTCTATCGATTGGTTTAACTCCCGTGCCTTCTCCTTTATCTAACATCCCTAGCACAACCGTTCCATCACCTCACActcaaacaaattttacatcAACAAACAATATACATTGTTTTCCTTTACAATCTCAAATGATGCCAAATTCAGACGATCCCTTGCTTTCGAGTAGCCCAAAAGATTTTCCGACGAAGAAGAAATTCGAATTTAACGGAAtcccattaaaattaatcagcGGTAATGCTATCATCGACAGCAACTTCACCGGGATCCTTCTTGATGCAAATGgggaattaaaattaatacaaaccGGTCCGAATGCATTTCATACCAAAAACATCGTTTTGGCGACTCCTCATATTATCACCCAACTTCACAATAATCATCCAAGCAAAGAAGAGgatgcaaataaaaaaatggttcCACCtgtaaaacaaattatacaaACCGTCGTTCCCACAGCAACAAAGCAAATCATTTTAACGAAACCAAAAGAtgttaaaatagaaacaatGAAACATgaagaagtttttttaagtCCAACAACtatatCCAGTAATTCTACAAAGAATCCTCGGAAAAGGCCTCGATCTGAACCGCTACAACTACCTATTTTACATCAATCAAGATTAAGGGCTACAAGAAGTAAACCACATGGTTCGTCGAGGTTTACACCATCTCCCATTTTAAACCCAAGTCGACCCGGAAATGGGTTGTATTGGAATATGAAATCTAAACCGATTGaTCCAGAAAACCAAGAAACAACATGGACCGATCCTGTTCCAGAAACCGACTCTACACCACACATAAACGTTGGGTCACATTTCCAAACCTTATTACCTCAATGCAGACCTTTGGATACTCGGTATGTTCAACAACCGACTAAAGAAGATCTTCTTTGGGATCCTggtataaataaatcaaaagaaGAGGTCGAAATGTATTTTGATTTTGCTTGCTGCGCTGCTCTTCCTGGCGGTGGAAGAAACCAAGAGTACGCAATGCACGTTCTCAACCTCTCCGATGGAAATATCCAtgAAGCAATGCTGAAATTGATGCAACCGACTCCGTCTCTGCCTTCTAAAAACCCCCTTCACGACTACCACTATTCAGAAACTGAAAAGTGGTCCGTCTTGGAGACCGATCTCTTCCAACAAGCTTTATCAAAGTATGGTAAAGATTTCGCAATGATATCCCAAGAAATCGGATCGAAATCGATGAAACAATGCGTCGAGTTTTACTATGTTTACAAAAAGATGTGTAAAGAGGATTATAAGGTAGCTAAACAGCTTAGAGAGAGATGGTCAAGTGCTGAAATTGAAGAGAAGCAGTTTGCCGATTCAAAATTACTTGGGATTGCAGACTCGGGATCACCTATAACTGAACAAAGAAGTTTTCCGTGCGAATTCGTGGATTGTTCTGcaagttttaattcaaaagcAGCCCTAAATGGTCACATTAGGATACATGGTGGCAGCGTGCGTAGTAATTGTCCGAATACGACATCCATCCAAGAAAGAAAGTTAACGTTGGTCACCTCAAGCAACCAGTGTCACAACAGCGAAACGATAGAAGATTATCCGTGTAAGATATGCGGGAAGAtattcacaaaaataaaaagtagaaGTGCTCATATGAAATCTCATCGGATACAAGATGAAGGCAGACGTGGTTTTTATTCCTTCGATCACGCACCAATCAATAATTCCTTCGGTACTTAG
Protein Sequence
MTAVNAGVHEITGVRLPLQHYTGSHAVFMYSTASDGNVTLQLKEPDDLDRTSLAAVLARLQDDSSFSISYQDADMLSDGSIDVLLGTGPGSQQGGGESVTTAPFDLFDSSNGPDLTLSPQTFTNSTEAFINDNSNSLGVPADNEAVSSTDEKKPSSLNSEASKLTVKRPRPKAVSPNRQGPQQCQVCSKVFGNASALAKHKLTHSDERKYICNMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSGSSNGATTMSPAQGAASGDAASPHGSSCIQYAPPPTTSVTSTTTTTTTSLGNSGSSNSTGKSQLQQLLATEPVKGGGANDGLTKQLDLIHQIMEQTQRQSHSVTTKTNLKSNSKSNTKSSSSKVQKPLSSQNASIKPSSSSPQSKVTSTTSPGNNASSSGKDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDNKKNEKKDPNGPPLQTASVSVRALIEEKIISKRNISSSSDDTSSPVRTSAPPLFPLTVHSPVTSGTTSEADSSKTSFAVPAPPQLSTVVEKSRRHSDAETFTVPRTPQQDADTLADLILNKKEKVTVKRTTSDPGQSTPQIIQFQSGEAFTLGVTYQPDDGYLSPSLHDEVFTQVQDTMLLQGVDTQQLASIQFQNIETDSLLQDHPEQQLQEISLDDYNLPDSVTDSPSYQSTQSVTHQDLRAVLDSPLPESLAEFSTFHTTGSLDIPSPSYQRSPAQFSNSPHPSMAAQSPLQSPLVRHDSPAYTYPTPPASHEGQSPCFGQNTILPMVSPKQEYIKDIDQNNQLLTTDFFSTTMSSSAAVEEALEEVLPGESIAADDLYSSLSNSPPPQSPLSIGLTPVPSPLSNIPSTTVPSPHTQTNFTSTNNIHCFPLQSQMMPNSDDPLLSSSPKDFPTKKKFEFNGIPLKLISGNAIIDSNFTGILLDANGELKLIQTGPNAFHTKNIVLATPHIITQLHNNHPSKEEDANKKMVPPVKQIIQTVVPTATKQIILTKPKDVKIETMKHEEVFLSPTTISSNSTKNPRKRPRSEPLQLPILHQSRLRATRSKPHGSSRFTPSPILNPSRPGNGLYWNMKSKPIDPENQETTWTDPVPETDSTPHINVGSHFQTLLPQCRPLDTRYVQQPTKEDLLWDPGINKSKEEVEMYFDFACCAALPGGGRNQEYAMHVLNLSDGNIHEAMLKLMQPTPSLPSKNPLHDYHYSETEKWSVLETDLFQQALSKYGKDFAMISQEIGSKSMKQCVEFYYVYKKMCKEDYKVAKQLRERWSSAEIEEKQFADSKLLGIADSGSPITEQRSFPCEFVDCSASFNSKAALNGHIRIHGGSVRSNCPNTTSIQERKLTLVTSSNQCHNSETIEDYPCKICGKIFTKIKSRSAHMKSHRIQDEGRRGFYSFDHAPINNSFGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01098742;
90% Identity
iTF_01098742;
80% Identity
iTF_01098742;