Omur089520.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- -
- Assembly
- GCA_963969525.1
- Location
- OZ018397.1:21586504-21589802[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.044 4.7e+03 0.3 0.0 25 52 184 211 176 213 0.75 2 7 0.0024 2.5e+02 4.4 0.0 23 46 238 261 234 267 0.85 3 7 0.0032 3.4e+02 3.9 0.0 21 48 264 290 259 293 0.87 4 7 0.0016 1.8e+02 4.9 0.1 23 47 322 346 316 352 0.81 5 7 0.024 2.5e+03 1.2 0.1 21 43 348 370 340 374 0.82 6 7 0.00031 34 7.2 0.1 19 49 374 404 368 407 0.83 7 7 0.00028 30 7.3 0.0 21 44 404 427 400 434 0.88
Sequence Information
- Coding Sequence
- ATGGCATTTTTGGCACTTATATCTGGACAAATTGGCAATGGATCACTGTCCATTACTTTAGGTGATGGTTTACCTGAGCAAATATGTTCTGACTGCGCAAAATCTGTCTCTGAATTCTACTTGTTCAAAAGAAAGTGTGAAGAAGCCGATAAGATGTTAAGGGTAAAATTTGGGAAGTCTCCATTAAAATTAGACGAAGGTGATACTTATACAGTAGACTTAAATGTAGACCCAAAAGACCTAAATGCTATCATTAAGGCAGAAACTTTAGAGGAACAACAGATTTCTGTTAAAGCTGCTGATAGTTTAAAAACACCAGAAGATGAATCTGAAAGAGAACCAGAATATATAATCGAGGAGGAGGTGGAAAATACCGGAGATGAATCTGTTGAGGCTGAGGAGATAATTGCAAATGATACAATTGATCCATTTCTAGAGTTGAAAGTTGAGTATGATGGTGGCGCCtctgataataaattttatgaaaacgaGGTGAACTTCCTTCCTATAGAAACTACTCTTGGTAGTGGTGATTCTAATAAAAGGAAATATACGTGTGAGTTGTGCGAGAAGAAATTCATTAAGAATTCTCACCTGACAAGGCATATGAAAACACATGCAAAGGTAAAACCACATATGTGTGATCAGTGTAATAAAGGATTTGCGAGGGCCGACCAATTGGCTCACCATGTAAACATGCATTCGGGGATCAAGCCACATGTCTGTAAAATATGCACGAAAGGTTTTAATCAGCTTTCAAATTTAAAGGATCATATGCGAACTCATAACGGGGAAAAACCGTTTTTGTGCTCGACGTGTGGAAAAGGCTTCAATCAATTGGGAAATCTCAGGCAGCATACAGTCAGGCATAGTGGAATTAAGGCACATTTGTGTAGCATCTGCGGAAATGGATTTGCTAGTAAAGGTGAATTAGGAGCGCATTTGAGGAAACATactgGCGCTCGGCCATTCGTATGCCCCATTTGCAATCATGGTTTTACTACATCCAGTTCATTAACTAAACATAAACGTATTCACTCGGGAGAGAAGCCATATGAGTGTGAGGTTTGTAAAATGAAGTTTTCGCGTTCCGGTATACTTGCTAGACATAGGCGGACTCATACAGGCGAGAAGCCCTATGTTTGCAAGTATTGCACAAAAGCGTTTTCCCAATCAAATGATCTCAGTTCACATTTGCGCATTCATACCGGAGAGAAACCATTCATCTGCGATGTTTGTGGTACAGCCTTTAGACAGAGCTCAGCAATGAAAACACATAAGAAGACCCATCTTGATAAGTCTAGCCTTCTCTCATCTAAGGTCATTAGTATGATGCACAGTACATTTCTGAATACTCTATAG
- Protein Sequence
- MAFLALISGQIGNGSLSITLGDGLPEQICSDCAKSVSEFYLFKRKCEEADKMLRVKFGKSPLKLDEGDTYTVDLNVDPKDLNAIIKAETLEEQQISVKAADSLKTPEDESEREPEYIIEEEVENTGDESVEAEEIIANDTIDPFLELKVEYDGGASDNKFYENEVNFLPIETTLGSGDSNKRKYTCELCEKKFIKNSHLTRHMKTHAKVKPHMCDQCNKGFARADQLAHHVNMHSGIKPHVCKICTKGFNQLSNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCSICGNGFASKGELGAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHRRTHTGEKPYVCKYCTKAFSQSNDLSSHLRIHTGEKPFICDVCGTAFRQSSAMKTHKKTHLDKSSLLSSKVISMMHSTFLNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096830;
- 90% Identity
- iTF_01096830;
- 80% Identity
- iTF_01096830;