Ofas015093.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold27:674863-684374[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.049 54 4.1 0.6 17 48 184 215 166 220 0.87 2 9 0.0019 2.1 8.6 0.1 21 48 246 273 238 276 0.91 3 9 0.0017 1.9 8.7 0.0 21 50 275 304 270 306 0.90 4 9 0.0045 5 7.4 0.2 16 49 328 361 324 366 0.91 5 9 0.0015 1.7 8.9 0.0 21 48 391 418 386 420 0.91 6 9 0.022 24 5.2 0.1 20 48 419 447 415 450 0.89 7 9 0.024 27 5.1 1.1 16 48 444 476 432 478 0.82 8 9 0.022 25 5.2 0.7 16 48 473 505 470 508 0.82 9 9 0.021 23 5.3 0.7 22 48 508 534 498 536 0.85
Sequence Information
- Coding Sequence
- ATGAGTGAAACATTGCCAATAACATTGATAACATCTTGTGAAGTTAAGGAGGAATGTCCTTTAGATATACCCTTCGAGACGAACTCCTACGAGAATCCGATCGATTTTGGAGGAGGTACATCATCTCTTCTTAAGTGCCACCACTGTGGACTCCGTGCCATTGGAAGAAGTGCTTTGAAATCTCACATTTTTGACAAACACATTGCAGTTCTTCAGCCAATACTCCTGAGTCGAGGGATTCCTCCTGAGTCGAAGTGTTTCGAAGAAGGTAGATATCGGAATGCTGAAAGAAGCTCTTCTTTCAATGGGATTACTTCGTATCCAGGGGGAAAATCGTTCCAGCAAATACTTACAAATGGACAAATGGTGCAAGAACTGAGATCTGCTAATAATGATTGCTTGCTATTGCATTCTACAAATCCAAAATTTGATTTCAAATCATTTGGCTCTAATATTATGAAAAGATGTGTGAATGGTGTGATGAAGTTCTGTTGCCCTTACTGCGAGCATGCCTCATCTCGCCCGGCCATCTTGAAAAGTCATATACAAGCCAGACACACGGGTGAACGTCCTTTTTCTTGTACTTACTGCGATTACAAGGCAGTGCAGTCGAGTGCCATGAAGTCACACATAAGGGCTAAGCATACCGGAGAGCGGCCTTATCACTGCCTTCACTGTGAACATAGGGCTTCTAGTTCTGGAGATTTGAAGAAACACGTCATGGCTATACATACCGGCGAACGGCCGTTCGCTTGCCCTCATTGTGACTATAAGTCTTCTCAATCTATTAATTTGAAGTCCCACATCATAGCAAAACACACCGGGGATCAGCCTTTTTCATGTTCTATCTGCAAATTTGTATCGAGTAAAATGAGTGACTTAAAGAAACACGTTAGAAAGCAACATAAAGCCGAAGTGCTGTTTTCGTGTCTCGAATGTGAGTTTAAGTCGACTACCTCCAGTTGTTTACAAAGACACGTTAAATCGAAGCACACCGGTGAACGCCCTTACGAATGCACACTCTGTGACTTCAAGTCAGTTCAGTCTAGTACTTTAAAGGCCCACGTCAGGGCTAGACACACCGGTGAGCGGCCTTTCCCCTGCCTACATTGTGAATATAAAGCCTCCAGCTCGGGAGATTTAAAGAAACATGTGATGGCCATTCATACTGGAGAAAGACCATTCGCTTGCCCTCATTGCGACTACAAGTCAACGCAGTCTTTCAATTTGAAGACACACATAATGGCGAAACACTCTGGCGAACAACCGTATTCTTGTGTCCTGTGTGAGTTCAGATCTGCCCACTCGAGTGACTTGAAGAAACACGTCAGGGCTCAACATACTGGCGAGCGACCGTATTCCTGTTCACTCTGCGATTACAGAGCGGTACAGTCGAGCGTATTGAAGGCTCACATGCGATCGAAGCACACTCGAGAGCGGCCATACCCATGTCCTCTATGTCAATTCAAGTCAATCAGCTTCTTTAGCTTGAAAGAGCATCTGAACGCTAAACACACTGGCCATCGGCCTTATTCCTGTTCCCTTTGTGAGTACGCCTCATCAAGTTCTAGTTGTTTGAGAAAGCACATCAAAGTCAAACATGCCAGCTAG
- Protein Sequence
- MSETLPITLITSCEVKEECPLDIPFETNSYENPIDFGGGTSSLLKCHHCGLRAIGRSALKSHIFDKHIAVLQPILLSRGIPPESKCFEEGRYRNAERSSSFNGITSYPGGKSFQQILTNGQMVQELRSANNDCLLLHSTNPKFDFKSFGSNIMKRCVNGVMKFCCPYCEHASSRPAILKSHIQARHTGERPFSCTYCDYKAVQSSAMKSHIRAKHTGERPYHCLHCEHRASSSGDLKKHVMAIHTGERPFACPHCDYKSSQSINLKSHIIAKHTGDQPFSCSICKFVSSKMSDLKKHVRKQHKAEVLFSCLECEFKSTTSSCLQRHVKSKHTGERPYECTLCDFKSVQSSTLKAHVRARHTGERPFPCLHCEYKASSSGDLKKHVMAIHTGERPFACPHCDYKSTQSFNLKTHIMAKHSGEQPYSCVLCEFRSAHSSDLKKHVRAQHTGERPYSCSLCDYRAVQSSVLKAHMRSKHTRERPYPCPLCQFKSISFFSLKEHLNAKHTGHRPYSCSLCEYASSSSSCLRKHIKVKHAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096014;
- 90% Identity
- iTF_01096014;
- 80% Identity
- iTF_01096014;