Ofas018521.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold115:14142-14975[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.013 15 5.9 0.1 21 48 12 39 7 41 0.79 2 4 1.7e-05 0.019 15.2 0.3 19 48 39 68 34 70 0.92 3 4 1.9e-05 0.021 15.0 0.2 17 48 66 97 65 100 0.91 4 4 0.29 3.3e+02 1.6 0.2 18 48 97 126 94 127 0.72
Sequence Information
- Coding Sequence
- CACTTAAAACATCATGTCATGGGCAAGCATACAAAAGAGAAGCCTTACAAATGCCCTGAGTGTGATTACTCAGCAGTTCGAGCAAATGATTTAAAAGTACATGTGAGTGCAAAGCATAAAAAAGAGAGGCCGTTTCCTTGCCCACATTGTAATTTCAGCTCTGCCCAGTCAGGGAACTTAAAGGCCCATATCAAGGCTAGGCATGAAAATGAAAAACCATTTAAATGTCCTCATTGCGACTACAGTGCAACACAGTCAGGAAACCTTAAAGTTCACATTAGAAGTAAACATTCCCAAAATGAGCAGTTTAATTGCTCCCTGTGTGAGTACACAGCTGCTCATCCTGGTGACTTGAAACAGCACACTAAAATAGAGCACAACCTGTAA
- Protein Sequence
- HLKHHVMGKHTKEKPYKCPECDYSAVRANDLKVHVSAKHKKERPFPCPHCNFSSAQSGNLKAHIKARHENEKPFKCPHCDYSATQSGNLKVHIRSKHSQNEQFNCSLCEYTAAHPGDLKQHTKIEHNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096137;
- 90% Identity
- iTF_01096137;
- 80% Identity
- iTF_01096137;