Ofas008734.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold200:35332-43852[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.91 1e+03 0.0 0.0 27 49 63 85 60 87 0.85 2 10 4.4 4.9e+03 -2.2 0.0 27 44 121 138 119 141 0.83 3 10 8.8 9.8e+03 -3.1 0.1 26 44 162 179 158 183 0.64 4 10 0.0051 5.7 7.2 0.1 14 44 205 235 200 240 0.76 5 10 0.0014 1.6 9.0 0.7 21 44 240 263 234 267 0.79 6 10 0.015 16 5.8 0.2 17 44 264 291 263 296 0.76 7 10 0.0016 1.8 8.8 0.1 21 52 296 327 290 329 0.82 8 10 0.0002 0.22 11.7 0.3 17 45 348 376 339 380 0.89 9 10 0.051 56 4.0 0.4 21 33 380 392 376 407 0.70 10 10 0.014 15 5.8 0.0 18 40 433 457 424 464 0.80
Sequence Information
- Coding Sequence
- ATGGATAACATCTTCTATCCAGAACATATAGCCATCAAGACTGAGCCTGCAGATGTAGAAACGGAGCATGCGTATTACTCAGTTTCAGTGAAGGAGGAGCCTGAACTGGACATTCCGTATGAAGGGGATTGTGTTGCTCCAGAACAGGACTCACTCTGCAAAGAGACTTTTAGGAAACTTTACATCTGCTGGTACTGCGCATACAGTATTGATTATAAGAAAAATCTGAAAGAACACATTTTTACCAAGCATATGGATGAGCTCACTCCTCAAAACTGCTCTTACTGCGATTACAGTACGTCTTCAAAGAATAATTTAAAGATTCATATGTTTAAGCACACTAGAAAAAGTCTCCACAAATGCACCTACTGTTATTTCAGTACATTTCATGAGGACAACCTAAAGGTACACATGGCTAAACATAATGGAGAGGGCGTTATCATATGTTCGTATTGTGATTATAATACGGCTAATCGCAATCATACCTGTCTCTGTGATTACAGTACAGCTAAGAAGGATAATCTGAGAATACATATGAGCACACAAGCAAAAGGGAAATCTCATAAGTGTCCTTACTGTGACTACAGTACTCCTAATAAGGGTCATCTTAAGAAACATATGAGCAAACACACAGGCGAGCGACCTCATGCTTGCCCTTACTGTGATTATAGTACGGCTAATCAAAGTAATTGGAAAATACACTTGAGGAAGCACACAGGCGAACGACCTCATACATGTCCCTGTTGTGATTACAGTACTGCTCGGAAGGGTAATCTAAGAATACATATGAGCAAGCATACAGGAGAGAGACCTCATACTTGTCCTTACTGTAATTTTAGTACAGCTAACCATGATCATTTAAAAATACACTTGAGGAAGCACACAGGCGAGCGACCTCATACTTGCCCCTACTGTGATTACAGTACTGTTTGGAAGAGTAATCTGAGTACACATATGAGCAAGCACACAGGAGCGAAACCTCATACTTGTTCTTATTGTGATTATAGTACGGTTAGCCCCGCTCATTTGAAAATACACTTGAGCAAGCACACAGGCGAGCGACCTTATACTTGTCCCCGCTGTGATTACTGTACTGCTCAGAAGGGTAATCTCAGAATACATATGAGCACACACGCGAAAGAGAGACCTCATACTTGTCCTTACTGTGATTACAGTACGTCTGTAAAAGGTTATCTGAGGTTGCATATGAAGAAACACACTGGAGAAGGTCTTCAGAAGTGCCCTTACTGTGATTATAGTACGGCTAATAAGGCCCACCTAAAAATGCATATGTACAGGCACACAGGCGAGAGACCTCATAACTGCCCCTTCTGTGATTACAGTACGGCTCGGAAGAATCGCCTGAATTTACATATAAGAAAGCACACAGGGGATTGCCGCCTTTAA
- Protein Sequence
- MDNIFYPEHIAIKTEPADVETEHAYYSVSVKEEPELDIPYEGDCVAPEQDSLCKETFRKLYICWYCAYSIDYKKNLKEHIFTKHMDELTPQNCSYCDYSTSSKNNLKIHMFKHTRKSLHKCTYCYFSTFHEDNLKVHMAKHNGEGVIICSYCDYNTANRNHTCLCDYSTAKKDNLRIHMSTQAKGKSHKCPYCDYSTPNKGHLKKHMSKHTGERPHACPYCDYSTANQSNWKIHLRKHTGERPHTCPCCDYSTARKGNLRIHMSKHTGERPHTCPYCNFSTANHDHLKIHLRKHTGERPHTCPYCDYSTVWKSNLSTHMSKHTGAKPHTCSYCDYSTVSPAHLKIHLSKHTGERPYTCPRCDYCTAQKGNLRIHMSTHAKERPHTCPYCDYSTSVKGYLRLHMKKHTGEGLQKCPYCDYSTANKAHLKMHMYRHTGERPHNCPFCDYSTARKNRLNLHIRKHTGDCRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095973;
- 90% Identity
- iTF_01095973;
- 80% Identity
- iTF_01095973;