Ofas007971.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold636:259078-267867[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.014 15 5.9 0.1 22 48 162 188 156 193 0.86 2 7 0.0024 2.6 8.3 0.1 17 48 215 246 210 248 0.86 3 7 0.0035 3.9 7.8 0.2 17 49 244 276 242 281 0.86 4 7 0.073 81 3.5 0.2 21 49 306 334 299 336 0.88 5 7 0.0012 1.3 9.3 0.1 19 48 333 362 330 364 0.88 6 7 0.00051 0.56 10.4 0.7 17 48 360 391 359 394 0.94 7 7 0.00093 1 9.6 1.0 20 49 392 421 390 423 0.87
Sequence Information
- Coding Sequence
- ATGCCAATCAAAATGGAACCTGCTGAAGACAATATTGATCTATTCTGCGAACTAGGAAATCCTTCTGAAATAGATGGAGAAACGTTACCATCTACATCTAACGAAATTGGCGCAGTCAAAGAAGAGTATCCTTCAAGTATGTCCACAGCAGATCGATATCTCGCAGATGTCGTGTCCGACATGAAGAAAAGTACTGTACGCTCTCAGTTCCTAGTCTGCGTTTGCCACCATTGTGGCTGGAGCACGGATTGTAAGTGGGCTGTAAGGACACATATACATGAAGAGCATGCGGAAGAGTTTTTTTTGGTGCAGACTTCTTCCTGCCCTCCTGAAGACACGACTGTGCATCGTGTTAATCGGGCTCTTGCCCGTAAATGCAGCCGATCTAAAAATGGTGTAGATTTAAAGAAACTCTGTAAAAGAACGACTACGGGCGAAGTTTCTAGTCACTTGAAGACCAACGTATTGGCGAAACACACGAAACAAAGGCCCGATTCCTGCCCATTCTGCGAGTACAAGACAGCAATATCTAGCAATTTGAAGGTGCATGTTATGGCCAAACACACTGGCCAACGTCCTTTTTCGTGTGAGCGGTGTGAGTTCAGCACTGCCAGTTGCAGCTCCCTGAAGAAACACGTCATGTCCAAACACTCCAATGAACGCCCCTTTACCTGTCCCCACTGTGTGTTCAGCACGGCACGGTCCGGTTCTCTCAAGATTCACATAATGTCCAAGCACACTGATGAACGGCCTTATTCCTGTCCCCACTGTGACTACAGTACTGCCAGGTCATACAAAATAAAAACACACGTTATGTTGAAGCATACTGGGGAGAAGCCGTTTTCTTGCTCCCAATGTGACTATAGAACTTCTGTATCTTCGTATTTGAAGATACACGCTATGTTTAAACACACTCGCGAGCGTCCTCATTCTTGCACTTACTGCGAGTACAGCTCAGCTCTATCTTCCAATTTGAAGAACCATATAATGTCCAAACATATTGGGGAGCGACCTTATACGTGCAAGGACTGCGAGTACAGTACAGTACAATCAGCTGATTTGAAGAAGCACATAATGTCCAGGCACACTGGTGAACGGCCTTATTCTTGCCCTCATTGCGAATACTGTGCTGCTAGTTCTGGTACTTTGAAGAAACACATAATGTATAGACATACTGGTGAACGACCTCATTCGTGCCCAAACTGTAGTTATAGATCAGTTTCTTCTAGTAATCTGAAAAAACATATCCGAATTATGCACTTAAGTGAATGA
- Protein Sequence
- MPIKMEPAEDNIDLFCELGNPSEIDGETLPSTSNEIGAVKEEYPSSMSTADRYLADVVSDMKKSTVRSQFLVCVCHHCGWSTDCKWAVRTHIHEEHAEEFFLVQTSSCPPEDTTVHRVNRALARKCSRSKNGVDLKKLCKRTTTGEVSSHLKTNVLAKHTKQRPDSCPFCEYKTAISSNLKVHVMAKHTGQRPFSCERCEFSTASCSSLKKHVMSKHSNERPFTCPHCVFSTARSGSLKIHIMSKHTDERPYSCPHCDYSTARSYKIKTHVMLKHTGEKPFSCSQCDYRTSVSSYLKIHAMFKHTRERPHSCTYCEYSSALSSNLKNHIMSKHIGERPYTCKDCEYSTVQSADLKKHIMSRHTGERPYSCPHCEYCAASSGTLKKHIMYRHTGERPHSCPNCSYRSVSSSNLKKHIRIMHLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096059;
- 90% Identity
- iTF_01096059;
- 80% Identity
- iTF_01096059;