Ofas008592.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold290:473196-479042[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.43 4.8e+02 1.1 0.2 22 48 190 216 185 220 0.79 2 6 0.072 80 3.6 1.4 16 36 213 234 209 245 0.74 3 6 0.00012 0.13 12.5 3.1 16 48 242 274 234 277 0.91 4 6 0.18 2e+02 2.3 1.2 18 43 273 298 271 303 0.67 5 6 5.5e-05 0.061 13.5 0.6 19 49 303 333 296 338 0.88 6 6 1.3e-08 1.4e-05 25.2 0.9 17 48 359 390 354 393 0.91
Sequence Information
- Coding Sequence
- ATGGAAAAGCTCATCTCTCCCGGAGGTGGGATCAAACAAGAGGATGTATTAAATATGCCTTTTGAAGGAGAACCCATTCTAACAAAATATGAGCCATTAATAAAAGCTGAGCCTACTGAAGAGGAATATGATCACGGCAGTAGTACAGTGTCTGCAATGGAAGTGCGTGAAGTTCCCCAGCCGTCCTGGTGTGGGATCAAACAAGAGGATGTATTAAATATACCTTTCGAGGGAGAACCCAATATGGCCTGCTGGAGATATGGGTTCCGGTGCCATCACTGCGGACTTACCACCAATAGAAGGAAGGACATTCGTTCCCACATCACCGAGGAACACGCCGATGCTCTTCTGCTGCCCCAAGTGGAAGTTTTCTTACCTCTCGGGCACAATCCTCACTCCTTCGAAGACATGAAGACTGCTATCAAGGAGGCGCCACCCGATTCGGGGATTCTGAAGAACCTCCTCAGGGTCAACAAAAACGTGGAACGTTATTCGTGTCTCCACTGCCACTACAAATCGACCCTCGCTTCAAATCTGAAGAGCCACATCATATACCAGCATACCATCGAACGGCCCTTTTCCTGCTCCTCTTGCGAGTATAAGGCGATCACCGCAAACACTCTGAGGGTACACACGAGATACAGACATACAAAAGAACGGCCCTTCTCCTGCCCCCACTGCGACTACAAGGCGATCAAGAAAGATACTCTTCAAAGCCACATCAGGTCCCATCACACGAGAGAGCGTCCGTATTCTTGCCCGCACTGTGAGCACAGAGCGACTCAGTCCGGAAACTTGCGGGTCCACATCAGAACTCAACATACCGGTGAACGACCCTATTCCTGCCCGTACTGCGAATACAACTCCGCCAGATCCAGTTACATGAAGGAGCATATGAAGACTCACCGTTCTGGCGAGAGGCCTCATTCCTGTCCACATTGCGACTTCAAGACACAACAGGCGTCCAACTTGAAGAGCCACATCAAGTCCCGACATACTGGAGATCGGCCTTTCCTCTGCTGCTACTGTGACTACAGGGCCCTGAAAGCCACCGCTTTGAGGACTCACATCATGTCCCAGCATACCGGCGAACAGCCCTACTCCTGTCCTCATTGCGACTACAAGACGACCCAGTCTAGGAATCTCAAGTCCCACTTAGAGTCCCGGCATCCTGTCGGACAGTCTTGA
- Protein Sequence
- MEKLISPGGGIKQEDVLNMPFEGEPILTKYEPLIKAEPTEEEYDHGSSTVSAMEVREVPQPSWCGIKQEDVLNIPFEGEPNMACWRYGFRCHHCGLTTNRRKDIRSHITEEHADALLLPQVEVFLPLGHNPHSFEDMKTAIKEAPPDSGILKNLLRVNKNVERYSCLHCHYKSTLASNLKSHIIYQHTIERPFSCSSCEYKAITANTLRVHTRYRHTKERPFSCPHCDYKAIKKDTLQSHIRSHHTRERPYSCPHCEHRATQSGNLRVHIRTQHTGERPYSCPYCEYNSARSSYMKEHMKTHRSGERPHSCPHCDFKTQQASNLKSHIKSRHTGDRPFLCCYCDYRALKATALRTHIMSQHTGEQPYSCPHCDYKTTQSRNLKSHLESRHPVGQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096082;
- 90% Identity
- iTF_01096082;
- 80% Identity
- iTF_01096082;