Ofas006729.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1852:79674-84813[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 13 6.1 0.1 20 48 83 111 79 115 0.90 2 13 0.11 1.2e+02 2.9 0.1 24 50 116 142 113 144 0.84 3 13 0.0099 11 6.3 0.3 22 48 143 169 138 172 0.89 4 13 0.22 2.5e+02 2.0 0.1 20 44 170 194 166 199 0.78 5 13 0.041 46 4.3 0.0 23 46 201 224 195 231 0.84 6 13 0.00072 0.8 10.0 0.1 22 48 229 255 223 260 0.86 7 13 0.034 38 4.6 0.3 22 48 258 284 253 287 0.86 8 13 0.0026 2.8 8.2 0.6 22 48 287 313 282 317 0.89 9 13 0.0042 4.7 7.5 0.1 23 48 317 342 314 345 0.87 10 13 0.058 65 3.8 0.7 21 49 344 372 339 375 0.84 11 13 0.0021 2.4 8.4 0.7 23 48 375 400 372 402 0.91 12 13 8.4e-05 0.093 12.9 0.2 17 48 398 429 397 434 0.83 13 13 1.2 1.3e+03 -0.3 0.1 22 44 432 454 430 458 0.72
Sequence Information
- Coding Sequence
- ATGGGCATCACTTCTTCTTCATCTTTCTCCATTAAATGTCAAGAAGATGTTGAGAGCACTAAAGTTAATCAGGAAACTCTAAACCCTGCTCCTGGATCTAAGCACTGCGAATATAAGTCGACTTCTGGCGATTTGAAACTACACTTGAAATCCAAACATTCCAGTAAAACGATTCATCAATGTCTCTACTGTGATTACAGTGCTCCTTATAATTATATTTTGAAGAGTCATATCGGGGCTAAACATACTAACGAACGACCATATTCCTGCACTTACTGCGAACACAGTGCAGTTCGTTCCGGCGATTTAAAAAAACATATAATGCTCAAACATTCAGGGCTAAGACCTTATCCCTGTCCTTATTGCGACTACGGTTCAGTTCATTCAAAGGCTTTAAAAAAGCACATATTGACCAAACATTCAGGAAAAAGACCACATTCCTGCCCCCACTGTGAATATAGTACAAATCAGTCTTGCAGTTTAAAGGATCACATAAAGGGCAAACATACTAACGAACGACCATATTCCTGCACTTACTGCGAATACAGCGCAGTTCGTTCTGGCGATTTAAAGAAACATATAATGAAACATTCCGGGTTAAGACCATATTCCTGCCCCCATTGTGAGTTCACAACAAATCAATCTAGCAGTTTAAAGGGTCACATAATGTCCCTACATACCAAACAAAAACCATATTCCTGCCCCCATTGCGAGTACGGTTCAGCTACTTCAAAGAATTTAAAAAGGCACATTTTGACCAAGCATTCAGGACAAAAACCACATTCCTGCCCCCATTGCGAGTACAGTACAACTCAGTCTTCCTATTTAAATACACATATAATGAACAAACATTCAGATCATAGACCATATTCCTGTCCTCAATGCGAATACACCACTGCACAGTCACACCTTTTAGAAAGACACATATTGGTCAAACATTCTGGACAAGGACCTCATTCTTGCCCCCACTGCGAGTATAGTGCTAGTGGGTCTCGCAATTTAAAGGATCACATATTGTCTAAACATACGGAACAAAGACCATATTCTTGCCATCACTGCGAATTCAGGACTGTTCAGTTGGGCAATTTAAAAAGGCACATATTGACTAAACATTTAGGACAAAGACCACATATCTGCCCTTATTGTGAGTACAGGACAACTCAGTCTTGCAATTTAAAGGATCATATAAAGAGCAAACATACAGAAGAACGACCACATTCCTGCCCTCATTGCGACTACGGTGCAGTTCGTTCTGGCGATTTAAAGAGACATATAATATTGAAACATTCTAAGAATCGACCACATTCCTGTCCCCATTGTGAATACAGTGCAGCTCTTTCTTCCTTGCTGAAGAATCACATAAAAAAGATTCATTCTAC
- Protein Sequence
- MGITSSSSFSIKCQEDVESTKVNQETLNPAPGSKHCEYKSTSGDLKLHLKSKHSSKTIHQCLYCDYSAPYNYILKSHIGAKHTNERPYSCTYCEHSAVRSGDLKKHIMLKHSGLRPYPCPYCDYGSVHSKALKKHILTKHSGKRPHSCPHCEYSTNQSCSLKDHIKGKHTNERPYSCTYCEYSAVRSGDLKKHIMKHSGLRPYSCPHCEFTTNQSSSLKGHIMSLHTKQKPYSCPHCEYGSATSKNLKRHILTKHSGQKPHSCPHCEYSTTQSSYLNTHIMNKHSDHRPYSCPQCEYTTAQSHLLERHILVKHSGQGPHSCPHCEYSASGSRNLKDHILSKHTEQRPYSCHHCEFRTVQLGNLKRHILTKHLGQRPHICPYCEYRTTQSCNLKDHIKSKHTEERPHSCPHCDYGAVRSGDLKRHIILKHSKNRPHSCPHCEYSAALSSLLKNHIKKIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095985;
- 90% Identity
- iTF_01095985;
- 80% Identity
- iTF_01095985;