Ofas000596.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1808:133479-146215[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.1 6.8e+03 -2.6 0.0 21 29 56 64 52 71 0.77 2 10 7e-05 0.078 13.2 0.1 10 48 89 127 85 130 0.93 3 10 2.7 3e+03 -1.5 0.0 37 48 145 156 135 158 0.81 4 10 0.12 1.4e+02 2.8 1.5 23 48 158 183 149 187 0.82 5 10 0.0013 1.5 9.1 0.1 20 48 184 212 180 215 0.85 6 10 0.00034 0.38 11.0 0.4 20 48 213 241 209 243 0.85 7 10 0.052 58 4.0 0.5 18 48 240 270 238 272 0.83 8 10 0.0029 3.2 8.0 0.8 16 48 267 299 260 304 0.84 9 10 0.00023 0.25 11.6 0.7 17 48 326 357 323 361 0.89 10 10 0.025 27 5.0 0.0 23 50 361 388 358 390 0.88
Sequence Information
- Coding Sequence
- ATGGATAACTGCTTCTCCACTCAAGATTGTATATTCATCAAGACGGAGCCGATTGATGAGGAAATAGACAGCGAGAGTTCCAGAGATTCTGCAGTCATACAGCCAGTACCGCCAGATGTCAAGCTGGAAGATGAACGCATCCAAGAAGCCTTACGAGAAGATTCCGATGAACAACCTTCGACTTCTGGGATTTACAGCCTGATGAAGGAAGAGTCGCCTCTGAATATCCCAGTTGAGGGTGGTTTATCTCTATCGGGAGATGAGCCGGGAAGAGATACTGCTTCTTCGAGCTCTCCTGGAGAAGCAGATGATTCCTGTCCACACTGCGAATTCAAGTCGACCAGTTCTAGAGCTCTGAAAGAACACTTGGAAAGCAAGCACAGTGACAGAGTGATATATCACTGTCTCCACTGCAATTACAGCTCTCCTTATTCAGGCAACTTAAAGAAGCACATTGTTTACAAACACAGCGGGCCTTGCTCTTGCCCACACTGCGGGTACAGTACGACGAACAATACCCGTCTGAGGAAGCACATCATGTCCAAACATGCGGGCCAGCGGCCTTACTCATGCCCCCACTGCGACTACACCGCAGTCCAGTCGGGCAATTTAAAGACCCACATAATATCCAAACACTCCGACCAACGCCCTTATACCTGTCCCCACTGTGAGTACGACACTGCCAATTCCAGCAATTTACGGACACACATAATGTCCAAACACTCCGAGGAGCGGCCTTATTCTTGTCCCCATTGCGAGTACAGCACAGCTGTTTCAAGCACACTGAAGATACACATTAGGTCCAAACATACCGGACAACGGCCTTTCACCTGCCCCCACTGCGAGTACAACGCAGTTTCATCAAGCACGATAAAGAAACACATCAGAGCCAAGCACACCATAGATCGGCCCTACCCTTGCTCCCATTGTGAATTCAGTGCGACCTATTCTAGTCAGTTGAAGCTGCACGTCATATCCAAACACACGGAAGAGCGGCCTTATTCCTGTCCACACTGTGAGTACAGCACAGCTAAATCGAGTAATTTAAAGTCGCACATAATATACAGACACACCGATCAGTCGCCTTATTCCTGCCCTCATTGTGAGTACGGTACGACAAGTTCCTTTAATTTAAAGACTCATATAATATCCAAGCACTCGGCACAGCGACTCTGA
- Protein Sequence
- MDNCFSTQDCIFIKTEPIDEEIDSESSRDSAVIQPVPPDVKLEDERIQEALREDSDEQPSTSGIYSLMKEESPLNIPVEGGLSLSGDEPGRDTASSSSPGEADDSCPHCEFKSTSSRALKEHLESKHSDRVIYHCLHCNYSSPYSGNLKKHIVYKHSGPCSCPHCGYSTTNNTRLRKHIMSKHAGQRPYSCPHCDYTAVQSGNLKTHIISKHSDQRPYTCPHCEYDTANSSNLRTHIMSKHSEERPYSCPHCEYSTAVSSTLKIHIRSKHTGQRPFTCPHCEYNAVSSSTIKKHIRAKHTIDRPYPCSHCEFSATYSSQLKLHVISKHTEERPYSCPHCEYSTAKSSNLKSHIIYRHTDQSPYSCPHCEYGTTSSFNLKTHIISKHSAQRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096019;
- 90% Identity
- iTF_01096019;
- 80% Identity
- iTF_01096019;