Ofas014404.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1114:125129-129387[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.8e-06 0.002 18.3 0.9 19 48 98 127 93 130 0.90 2 8 0.0033 3.7 7.8 0.3 22 47 130 155 125 158 0.86 3 8 0.00046 0.51 10.6 0.2 21 48 158 185 154 188 0.89 4 8 5.8e-05 0.064 13.5 1.2 21 48 187 214 183 219 0.85 5 8 0.098 1.1e+02 3.1 0.6 21 48 244 272 240 275 0.74 6 8 0.031 34 4.7 0.4 22 48 275 301 269 304 0.83 7 8 0.00034 0.38 11.0 3.6 21 48 303 330 298 335 0.84 8 8 0.0021 2.4 8.4 0.6 22 50 333 361 328 364 0.85
Sequence Information
- Coding Sequence
- ATGGACTTATCCTCTCTAGTAACTGTGAAAGAAGAGCCATCTGTAAACATCCCCTACGAGGGAGACCTGCTATTGCATGAAGATGATGACAGCGCTAAAATTGATGAGCAATCTCTAAACTCAGCGCCACTTGAAGAATTAAAGTATTCGAGCCAGCACTGCGAGTATAAGTCAACTTCTTCTGGCGATTTGAAATTCAAACATTCTAGTGAAAAAACGATTTATCACTGTCTCTACTGTGATTACAATTCTCCTCATGCTAGTCATTTGAAAAGTCATATAATTGCTAAACATACTAGCGAACGGCCACATTCCTGCCCCCATTGCGAGTACAGTGCAAAACTGTCACGCAATTTAAAGAGACATATATTTACCAAACATACTGGGCAAAGACCACATTCCTGTCCTCACTGTGACTTTAGTGCATTTCAGCCGAGCAATTTAAAAAGACACATATTAACCACACATTCAGGAGAAAGACCCTATTCCTGTCCCCAATGTGACTATAGTGCAACTCAGTCTTCCAATTTAAAGGATCACATATTGTCAAAACATACGGAACAAAGACCACATTCCTGTCCCCATTGTGAGTACAGTGCAGCACAGTCACGAAATTTAAAGAGTCATATGTTGGCCAAACATTCGGAACAAAGACCATATTCTTGCCACCATTGCGAGTACAGTTCAGCTCGTTTTTGCAATTTAAAGGACCATATATTGGCCAAACATTCAGAACAGCGACCATATTCCTGCCCGCATTGTAAATACCGTGCTGTTCGTTCTGGCGATTTAAAAATACACATATTGGCCAAACACACAGAACAAAGACCATATTCCTGTCCACATTGCGAGTACAGTGCAGCTCAGTCTTCCAGTTTAAAGGGGCACATATTGTCCCAACATACGGAACAAAGACCATATTCCTGCCCCCATTGTGAGTACAGCGCAGCACAGTCACGCTGTTTAAAGAGACATATAATGGCTAAACATTCTGTACAAAGACCATACTCTTGTCACCATTGCAATTTCAATGCAGTTCAGTCGAGCAATTTAAAACGGCATATATTGAGCAAACATTCGGGAAAATTACCACATTCTGCCCCTACTGACAGTACAGTGCAACTCATTCTTCCAATTTAA
- Protein Sequence
- MDLSSLVTVKEEPSVNIPYEGDLLLHEDDDSAKIDEQSLNSAPLEELKYSSQHCEYKSTSSGDLKFKHSSEKTIYHCLYCDYNSPHASHLKSHIIAKHTSERPHSCPHCEYSAKLSRNLKRHIFTKHTGQRPHSCPHCDFSAFQPSNLKRHILTTHSGERPYSCPQCDYSATQSSNLKDHILSKHTEQRPHSCPHCEYSAAQSRNLKSHMLAKHSEQRPYSCHHCEYSSARFCNLKDHILAKHSEQRPYSCPHCKYRAVRSGDLKIHILAKHTEQRPYSCPHCEYSAAQSSSLKGHILSQHTEQRPYSCPHCEYSAAQSRCLKRHIMAKHSVQRPYSCHHCNFNAVQSSNLKRHILSKHSGKLPHSAPTDSTVQLILPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096033;
- 90% Identity
- iTF_01096033;
- 80% Identity
- iTF_01096033;