Basic Information

Insect: Oligia strigilis
Gene Symbol: -
Assembly: GCA_951800025.1
Location: OX637547.1:14322834-14328916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.4 2.3e+02 3.6 0.0 9 21 74 86 72 87 0.83

2 7 0.91 87 4.9 0.2 3 20 163 180 163 182 0.91

3 7 0.001 0.095 14.2 0.0 1 23 202 224 202 224 0.94

4 7 0.0011 0.1 14.1 0.5 1 23 230 252 230 252 0.99

5 7 3.8e-07 3.6e-05 25.0 2.2 1 23 258 281 258 281 0.97

6 7 4.1e-06 0.00039 21.7 3.4 1 23 287 310 287 310 0.95

7 7 0.018 1.7 10.3 0.9 2 19 317 334 316 339 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.4	2.3e+02	3.6	0.0	9	21	74	86	72	87	0.83
2	7	0.91	87	4.9	0.2	3	20	163	180	163	182	0.91
3	7	0.001	0.095	14.2	0.0	1	23	202	224	202	224	0.94
4	7	0.0011	0.1	14.1	0.5	1	23	230	252	230	252	0.99
5	7	3.8e-07	3.6e-05	25.0	2.2	1	23	258	281	258	281	0.97
6	7	4.1e-06	0.00039	21.7	3.4	1	23	287	310	287	310	0.95
7	7	0.018	1.7	10.3	0.9	2	19	317	334	316	339	0.86

Sequence Information

Coding Sequence: ATGACTTCCCTTTTATTACTAAAATCCATGTTGTTTGCTAATGCTCTCCAAAAgagtaaaaagaagaagaagagcaaGATCAAGAAAACTcctaaaattaagaaaatagcAAACCTATGCATGTGTAGAATATGCAACAACGAACCAGGAGACATACCAATATTCAACAATTTTGTACAACCCAATATCCCAGAAGAGATAAAGAACTTTTCAGGCATAACTTTAAATAACGCAGACAATTTATCAAAACATATGTGTCAAAGTTGCCTGGATCTTTTAAATGGATGTATAATGTTCAGAGAAATGTGTCAGAGGACTAACAAACTACTGATTGAAATATCTATTAAGAAAGAATATACTCAAGACTGTCATAATTATGAAGAGGGTCATGATGCTGTTGATGCCAAAGCAGATAGTGAAGACTCTTACAACATTCCTTCACCAGAATTTACTATGGATAACTCTGAACTTCTCTCTCTATGGGGGTGCTCAAATTGTGGTGAAGAATTTCATGTTATGGCCACCTACAGCAGGCATGTTATCAAATGCAACGGCCAATCATCAGACGCGCCAAAACCACCAGGTGAAGTAACAAAGAGGAAGTTCCTTTGTGACATCTGTGGAAAGACTGCATATTCCAATGCTAGTCTTCTTGtccatagGGCCATCCACGAGAATGTGTTTCCTTTCAAATGCGACGTTTGTCCGTACCAAGGTCGAACAATGGATCTTCTGAAGGTGCACAAGAGATCTCACCTGGTTGATAAACCATTTAAATGCACACAATGTCCTAAGGCAACCACTACATCCAGTAATCTTGCTAAGCACATGCGACATGTGCATAGCACTACAAGACCATTTAAgTGTACTTATTGTGACAAGGCTTTCTCATACCAGCATGACATGAAAAGGCATGTTAAAGATATTCATTTAAGACAAGGCACTGTGGAATGTGATATCTGCCATAAGAAGTTTAATACTAAGAAAATATTACAAGGTCACAGATGGAAAATTCACAAGATTAAAGGTGAAAGACAAGGTCGTCTGCCTTCGTACTTACAATGTCAAGACATAGGACTAAATAATGAGAACAACATTAATGACAACACGAATAACTGTGAAAACAAttattaa
Protein Sequence: MTSLLLLKSMLFANALQKSKKKKKSKIKKTPKIKKIANLCMCRICNNEPGDIPIFNNFVQPNIPEEIKNFSGITLNNADNLSKHMCQSCLDLLNGCIMFREMCQRTNKLLIEISIKKEYTQDCHNYEEGHDAVDAKADSEDSYNIPSPEFTMDNSELLSLWGCSNCGEEFHVMATYSRHVIKCNGQSSDAPKPPGEVTKRKFLCDICGKTAYSNASLLVHRAIHENVFPFKCDVCPYQGRTMDLLKVHKRSHLVDKPFKCTQCPKATTTSSNLAKHMRHVHSTTRPFKCTYCDKAFSYQHDMKRHVKDIHLRQGTVECDICHKKFNTKKILQGHRWKIHKIKGERQGRLPSYLQCQDIGLNNENNINDNTNNCENNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01425462;
90% Identity: iTF_00449644;
80% Identity: iTF_01094433;