Ostr032419.2
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637569.1:4334886-4358196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 22 6.8 0.3 1 23 538 561 538 561 0.95 2 12 0.0063 0.6 11.7 1.2 1 23 569 591 569 591 0.95 3 12 0.83 80 5.0 1.4 1 23 595 617 595 617 0.93 4 12 0.00037 0.035 15.6 0.7 1 20 624 643 624 645 0.94 5 12 0.0079 0.75 11.4 1.0 2 21 652 671 652 672 0.92 6 12 0.00047 0.045 15.2 0.6 2 23 688 709 687 709 0.93 7 12 0.00075 0.072 14.6 1.0 1 23 714 736 714 736 0.97 8 12 0.0025 0.24 12.9 4.3 1 21 745 765 745 770 0.93 9 12 5.5e-05 0.0052 18.2 2.2 1 23 778 801 778 801 0.93 10 12 0.0085 0.81 11.3 0.4 1 23 807 830 807 830 0.94 11 12 0.029 2.8 9.6 0.3 3 19 843 859 841 860 0.89 12 12 0.053 5.1 8.8 1.0 1 23 873 896 873 896 0.97
Sequence Information
- Coding Sequence
- ATGAAGGAAGTTAACATAAACATTGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTAAACTACAATCGTCAAATGACTTACCACCCCTTCATCAAAGAATGTTTTCGTTTGCTCGGAAATATCGATGTTCCAGATGGTCTGGAAGTCCAGGTGTGTTGGGAGTGCCTGGCGCGCGTCAAATCTGTTATCAACTTCAAGGAACAGATACTAAAGTCTTACGACTTTCTTATCTCGTACTCTAAGGAGCACACATTCCTGGAGTCTCCTGATGACTTTGGCCCTCACGCCACCATCAATATGGAGTGGACAGGAGTGGAGTGTTTCGAGTGTTGGCCACAAGTAGAAGTAGTGGAGGATGATGAGATAGCAGGTGATGTTAAAAAGGAGGAAGAGATTGAAGATAAGTATTTTGAGGTGGCTTTAAAAGAAGAAACTTTTGACGACCCATACTTCCAAGATATGCCTACTGTTGACAATGATATAACATCAGATGAAGACGTGCAGCTTTCTAAACTAAAAGAGAACGAGACGGAGAAagggaagaagaagaaaaagagtGAGAAGAAGAAGGAACGGGAGGGAGATCGGATGCCAGCGAACAAACGACCGAGAAAGACGACACGAGGTCTCTATGACATAGCACAGTTTGAAGCTGCATATGACCAAATTGTCAACCACGGGGTGTCCGTACGACAAGCGGCCAAAATGTTCGATATCACACACGTCACTCTTCAAAGGTACAAGAAGCGGCGTCAAACCACAAATTTTCCTGTCAAAGTCGGTTATGCGCGGAACAGTTTTTATACAGCAGACCAGGAAACTCTCCTAACGAAATACTTGAAACAATACGCGGAGATATTTCCCGGGTTATGCGTGAGGGTAGTCAGAAAATATGCGACGGAATTCAGTCAGAAGCTGGGTTTGAAAACTCCGAAGCCTTGGTTTGACAATAAAATGGCTGGCATCGATTGGTACAAGAACTTCATGTACAGGAATAAAGCTTTAGAAGATAAAATGGATCGGCAATCTGCTAAAGAAAAAGTTAGAGTTTTTTATGATCGGCTGTTTAGTATTTTGTGTCAGTACAATATTGGTTCAGAAAACATTTACTCTTTAGATGAAATAGGAGTTAATATTGAAGAGTTTAGAGATAAAATTTGGTTGATGACGTCGAAAAATGGACCTATAGCTTTGAAAGAGTCTAAAGTTATGTTCACTTACGCAGCGAACGCTAAGGGTTATGTCATAccccctttatttttattaccagCAGAGAAAACAGAAGAAACTCCGAAAAACAATTTCGAAGTCAAAATAGAGAAAGATTTGGTGAATGAATCAGATTGTCCGAACGAGACAACATTtaataaattcttaaaaaatgGCGTCGATTTAAAAAACCTACCCGATTGGACGGAAGACCCTAATTTCTTGgtGGTCTACCCAAAGCTCCAGAAGACTAAGAAGGACAAAAACCTCGACAAAAAGAGTAGGAAGCTAAAGAATCTTCCAGAAGAACTTGTAGAATTGTACACTATGAGTAAAGAAGAGATGTGGGGCACCAGAATTGAGGATCTTAACAGCAAGGAGTTTCAGAAGCTTAAATATagGTGTAAAGATTGCATAATTGCCTTCAACACTGAGAAGTTGATGCTTGACCATCTAAATGGAAAACACCAACCGAAAAACGAAGACTGCCATCAATGCTCAATCTGCCATGCCTATTTCATAACTAAGGACAATGTGGCCGCGCACAAGGCGTTACATCTACAGGGTTATAAGTGTCGGGAGTGTGGTTTCAATACTACGCTCAAACGACGTATGTTGAAACATGTTGGGAGTCACGCGCCGGGTGGGGGTGTTCATGTGTGCCAGACTTGTGGTACTGGCTTTAGCACAAAATCGAAGCTAACATACCACCGCGTCGTGTGTTGTCAAGAAAAGCCACAATGTGACTGCTGTGGAAAAGTATTCGCCAACAAAATGACGCTGAAATACCACCTTAAAATCCTGCCTAAGAATAAAGATGATAAGCCTAAGGAGAAGCTGTACATACCGTGCAAGGGATGCGATAAAGTGTTCCATTCGAAGAAGAGCTATAGAGCGCATGCTGTAATCCACGACGGCGTAACCCACCCGTGCCCAATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACACGCGCAACCATCGCGAGCGGCAGGCGGGCAACTTGCACGAGTGCCGCGCTTGCGGCAAGACCTTCGCGAGCAGGGACTGCTTTAACAACCACATGCGGCTCAGCAAAAAGCACGTATCCCAGGATACTTTCCCACACGAATGTAACTACTGCGGAAAGAAATTCGCTTCAAAATGGTGCCTGACCGACCACATCGACTGGGATCACTTAAAGAAAATCAAATACCAATGTTCCTTTTGTTTTAAGGCATTTAAAACGGCTAAAATATTGGTGGCTCATGTCAATAATATCCATGAGGGAAAGAAAAAAGAAGCGGAGGGTGAACATCTATGCGAAATATGTGGGAAATCATACCGGACAGTGAAACGTCTAAAGGGCCACGTATGGGCGATGCACACAAAACGAGCAAGCAgcaaaatattcaaatgtaAGCTGTGTCCGGCGACGTTCATGTGGCAGACGAGCGTATACAAGCATATGAAGATGATGCACGATAATAATAAGAAGAGTAAGaCACCGCGCGCCGTCCAACCTGTGAAGAAAGAAGAGCcctacccgggaatcgaactagCGAACCGCATGCAGTACTTCCAACAAAACATTGGCGGCAACTTTAATATAGTTCACATACAGCCTTTGCCAGTAACTCAGAATATTGTATAA
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYNRQMTYHPFIKECFRLLGNIDVPDGLEVQVCWECLARVKSVINFKEQILKSYDFLISYSKEHTFLESPDDFGPHATINMEWTGVECFECWPQVEVVEDDEIAGDVKKEEEIEDKYFEVALKEETFDDPYFQDMPTVDNDITSDEDVQLSKLKENETEKGKKKKKSEKKKEREGDRMPANKRPRKTTRGLYDIAQFEAAYDQIVNHGVSVRQAAKMFDITHVTLQRYKKRRQTTNFPVKVGYARNSFYTADQETLLTKYLKQYAEIFPGLCVRVVRKYATEFSQKLGLKTPKPWFDNKMAGIDWYKNFMYRNKALEDKMDRQSAKEKVRVFYDRLFSILCQYNIGSENIYSLDEIGVNIEEFRDKIWLMTSKNGPIALKESKVMFTYAANAKGYVIPPLFLLPAEKTEETPKNNFEVKIEKDLVNESDCPNETTFNKFLKNGVDLKNLPDWTEDPNFLVVYPKLQKTKKDKNLDKKSRKLKNLPEELVELYTMSKEEMWGTRIEDLNSKEFQKLKYRCKDCIIAFNTEKLMLDHLNGKHQPKNEDCHQCSICHAYFITKDNVAAHKALHLQGYKCRECGFNTTLKRRMLKHVGSHAPGGGVHVCQTCGTGFSTKSKLTYHRVVCCQEKPQCDCCGKVFANKMTLKYHLKILPKNKDDKPKEKLYIPCKGCDKVFHSKKSYRAHAVIHDGVTHPCPICGKLFQWKRNLARHTRNHRERQAGNLHECRACGKTFASRDCFNNHMRLSKKHVSQDTFPHECNYCGKKFASKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRASSKIFKCKLCPATFMWQTSVYKHMKMMHDNNKKSKTPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNFNIVHIQPLPVTQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094841;
- 90% Identity
- iTF_01094841;
- 80% Identity
- iTF_01094841;