Ostr031624.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637568.1:1497222-1505935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 1.5 10.5 0.7 1 23 149 172 149 172 0.94 2 13 0.00051 0.048 15.1 2.8 1 23 176 198 176 198 0.98 3 13 0.00093 0.089 14.3 5.9 1 21 203 223 203 225 0.94 4 13 3.8e-05 0.0036 18.7 3.3 1 23 231 253 231 253 0.99 5 13 1.5e-07 1.5e-05 26.2 0.2 3 23 262 283 261 283 0.98 6 13 1.6e-05 0.0015 19.9 5.1 1 23 289 311 289 311 0.97 7 13 0.033 3.1 9.4 2.6 1 23 318 340 318 340 0.98 8 13 0.03 2.9 9.5 0.2 1 23 344 367 344 367 0.92 9 13 1.1e-05 0.0011 20.3 0.2 2 23 375 396 374 396 0.93 10 13 4.5e-05 0.0043 18.4 0.5 1 23 402 425 402 425 0.96 11 13 0.47 45 5.8 0.7 2 15 437 447 436 455 0.73 12 13 9.5e-05 0.009 17.4 1.1 2 23 461 483 460 483 0.91 13 13 0.0029 0.27 12.8 0.6 1 23 488 511 488 511 0.94
Sequence Information
- Coding Sequence
- atGTCTGAAATATGGAATCTAAGTACAATATGTCGATGTTGTCACGCCGATGGCCACTTCAAGAGCCTCAATTTATCGTATCAAGGTAAAAATGATGTCGAAATATACGAGATTATGTTACGAGAAACATTGGGGATATATATTTCGACTCAACCGATACCGCTGGAAGCAAGCTACACAATATGTGATAGCTGTATCTTAAAGCTGAGAGATGCAACTGAGTTCAAGAACCAAGTACTTATGTGTGAAGAGAAGTTCAAGTTATATTGTAACAATGAACAATTAGATTGTGAAATAAAGTGTGAAGAAGAAAATTATGAAAGTGACCTAAATAATGATCATGAAACAGATGAAGATCAGACACTGGTTGTCAAAAAAGgtAAAAGACGCGCCAATCTCAATTGCTCCTTGATCATTCAAGTGGACACAGACACAGGCGCCCAATTTTCTTGCAAAGATTGTGGGGGACTGTACCAAACAAAGAAAGATATGAACAAACACATTTACAACGCACATGCTGCCTTATTCAAGTGCGACTACTGTCCAAGACAATTGAAGTCATTCCAGACTTTAAAAAGACATCTAAAACTGCACACAGAAAAAGAGTATAACTGCAGTTTTTGTCCAAAGAAATTCGCTTCAAAACACAACTTGAAAGAACATCTAAATTGTCACACTAAGGAAAAAGTCTTCAAATGCCATTTGTGTGCAAAAGACTTTAAATACAACCAAACGTTAATAAGGCATCTAAGAGTACACGCTGGAACGAATAAAACAATCTTGTGTGATCTTTGCGGTTGGTCCTTTAACGACCGATCTAATTTGAACGCTCACATAAGAACGGTACATGAAAAACTACGTCCCTTCAATTGTAAAATATGTCAAAAATCGTACACCAACAAAAGACATTTGAAAGACCATTTAAAACTACACAACGGCGacgaaaaattatataaatgtgaCGTTTGTGACCAGAGACTATCTTGCCCAAAGACATTGAAGATCCATAGACTAAAACATGATAATAAATTCATGTGTAGGTATTGTTCTAAGATATTTGACGATGCAGTTTCGAGAATAGAGCATGTGAAAGCTCTTCATAACAAGGATCTTCCATGGCTCTCTTGCCCTCTTTGTGGGAAGGTGTTTTCAGGCAAATTTTCTCTCAATCGTCATGTAGACGAGCATAACGGCATTAAAAGGTTTCCATGCGAGGTCTGTGGGTTAAAATTCACTCAAAAAGTCGTTTTAAATCGTCATATTTTTCGCAAGCACAATCCCGAAGCTGATATTGATATTGGCAAGACTAAATGTGATATTTGCAAGCGTAGTTATAAGAATATAATTGTACATATGGATAAGCATAATAATAGGCAATGTGCCTGTGACATATGTGGGAAAACGTACCCAAATATGAGTGCTTTGAATAGACATAAGTCTTTAAAGCATTTTGGTAGGACTTTCGACTGTGGTATATGCGAGAAGAAATATTTGAAGAAGTCTACGTTAAATAGACATATAGTGAAAGTGCATCAGATTAAAATTGAAAAAGATTGTGCGGAGGGTACTTGA
- Protein Sequence
- MSEIWNLSTICRCCHADGHFKSLNLSYQGKNDVEIYEIMLRETLGIYISTQPIPLEASYTICDSCILKLRDATEFKNQVLMCEEKFKLYCNNEQLDCEIKCEEENYESDLNNDHETDEDQTLVVKKGKRRANLNCSLIIQVDTDTGAQFSCKDCGGLYQTKKDMNKHIYNAHAALFKCDYCPRQLKSFQTLKRHLKLHTEKEYNCSFCPKKFASKHNLKEHLNCHTKEKVFKCHLCAKDFKYNQTLIRHLRVHAGTNKTILCDLCGWSFNDRSNLNAHIRTVHEKLRPFNCKICQKSYTNKRHLKDHLKLHNGDEKLYKCDVCDQRLSCPKTLKIHRLKHDNKFMCRYCSKIFDDAVSRIEHVKALHNKDLPWLSCPLCGKVFSGKFSLNRHVDEHNGIKRFPCEVCGLKFTQKVVLNRHIFRKHNPEADIDIGKTKCDICKRSYKNIIVHMDKHNNRQCACDICGKTYPNMSALNRHKSLKHFGRTFDCGICEKKYLKKSTLNRHIVKVHQIKIEKDCAEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925057;
- 90% Identity
- iTF_01093354;
- 80% Identity
- -