Ofas029608.1
Basic Information
- Insect
- Oligia fasciuncula
- Gene Symbol
- -
- Assembly
- GCA_963082905.1
- Location
- OY720414.1:1183764-1194023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 1.4 10.4 0.7 1 23 152 175 152 175 0.94 2 13 0.00051 0.046 15.1 2.8 1 23 179 201 179 201 0.98 3 13 0.00093 0.085 14.3 5.9 1 21 206 226 206 228 0.94 4 13 1e-05 0.00093 20.5 3.8 1 23 234 256 234 256 0.99 5 13 1.5e-07 1.4e-05 26.2 0.2 3 23 265 286 264 286 0.98 6 13 1.6e-05 0.0014 19.9 5.1 1 23 292 314 292 314 0.97 7 13 0.033 3 9.4 2.6 1 23 321 343 321 343 0.98 8 13 0.019 1.7 10.2 0.2 1 23 347 370 347 370 0.93 9 13 1.1e-05 0.001 20.3 0.2 2 23 378 399 377 399 0.93 10 13 4.5e-05 0.0041 18.4 0.5 1 23 405 428 405 428 0.96 11 13 0.47 43 5.8 0.7 2 15 440 450 439 458 0.73 12 13 9.5e-05 0.0086 17.4 1.1 2 23 464 486 463 486 0.91 13 13 0.0029 0.26 12.7 0.6 1 23 491 514 491 514 0.94
Sequence Information
- Coding Sequence
- atgTCTGAAATATGGAATCTAAGTACAATATGTCGATGTTGTCACGCCGATGGCCACTTCAAGAGCCTCAATTTATCGTATCAAGGTAAAAATGATGTCGAAATATACGAGATTATGTTACGAGAAACATTGGGGATCTATATTTCGACTCAACCGATACCGCTGGAAGCAAGCTACACAATATGTGATAGCTGTATCTTAAAGCTGAGAGATGCAACTGAGTTCAAGAACCAAGTACTTATGTGTGAAGAGAAGTTCAAGTTATATTGTAACAATGAACAATTAGATTGTGAAATAAAGTGTGAAGAGGAAAATTATGAAAGTGACCTAAATAATGAATACACTATGGAGGTTGATATCGAGCATCCCATCACAGAAGTTAAAAATGgtAAAAGACGCGCCAATCTCAATTGCTCTTTGATTGTTCAAGTGGACACAGACACAGGCGCCCAATTTTCTTGCAAAGACTGTGGGGGACTGTACCAAACGAAGAAAGATATGAACAAACACATTTACAACGCACATGCTGCCTTATTCAAGTGCGACTACTGTCCAAGACAATTGAAATCATTCCAGACTTTAAAAAGACATCTAAAACTGCACACAGAAAAAGAGTATAACTGCAGTTTTTGTCCAAAGAAATTCGCTTCAAAACACAACTTGAAAGAACATCTAAATTGTCACACTAAGGAAAAAGTCTTCAAATGCCATTTGTGTGAAAAAGACTTTAAATACAACCAAACGTTAATTAGGCATCTAAGAGTACACGCTGGAacgaataaaacaatattgtgtGATCTTTGTGGTTGGTCCTTTAACGACCGATCTAATTTGAACGCTCACATAAGAACGGTACATGAAAAACTACGTCCCTTCAATTgtaaaatatgtcaaaaatcGTACACCAACAAAAGACATTTGAAAGACCATTTAAAACTACACAACGGCGacgaaaaattatataaatgtgaCGTTTGTGACCAGAGACTATCTTGCCCAAAGACATTGAAGATCCATAGACTAAAACATGATAATAAATTCATGTGTAGGTATTGTTCTAAGATATTTGACGATGCAGCTTCGAGAATAGAGCATGTGAAAGCTCTTCATAACAAGGATCTTCCATGGCTCTCTTGCCCTCTTTGTGGGAAGGTGTTTTCAGGCAAATTTTCTCTCAATCGTCATGTAGACGAGCATAACGGCATTAAAAGGTTTCCATGCGAGGTCTGTGGGTTAAAATTCACTCAAAAAGTCGTTTTAAATCGTCATATTTTTCGCAAACACAATCCCGAAGCTGATATTGATATTGGCAAGACTAAATGTGATATTTGCAAGCGTAGTTATAAGAATATAATTGTACATATGGATAAGCATAATAATAGGCAATGTGCCTGTGACATTTGTGGGAAAACGTACCCAAATATGAGTGCTTTGAATAGACATAAGTCTTTAAAGCATTTTGGTAGGACTTTCGACTGTGGTATATGCGAGAAGAAATATTTGAAGAAGTCTACGTTAAATAGACATATAGTGAAAGTGCATCAGATTAAAATTGAAAAAGATTGTGCGGAGGGTACTTGA
- Protein Sequence
- MSEIWNLSTICRCCHADGHFKSLNLSYQGKNDVEIYEIMLRETLGIYISTQPIPLEASYTICDSCILKLRDATEFKNQVLMCEEKFKLYCNNEQLDCEIKCEEENYESDLNNEYTMEVDIEHPITEVKNGKRRANLNCSLIVQVDTDTGAQFSCKDCGGLYQTKKDMNKHIYNAHAALFKCDYCPRQLKSFQTLKRHLKLHTEKEYNCSFCPKKFASKHNLKEHLNCHTKEKVFKCHLCEKDFKYNQTLIRHLRVHAGTNKTILCDLCGWSFNDRSNLNAHIRTVHEKLRPFNCKICQKSYTNKRHLKDHLKLHNGDEKLYKCDVCDQRLSCPKTLKIHRLKHDNKFMCRYCSKIFDDAASRIEHVKALHNKDLPWLSCPLCGKVFSGKFSLNRHVDEHNGIKRFPCEVCGLKFTQKVVLNRHIFRKHNPEADIDIGKTKCDICKRSYKNIIVHMDKHNNRQCACDICGKTYPNMSALNRHKSLKHFGRTFDCGICEKKYLKKSTLNRHIVKVHQIKIEKDCAEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925057;
- 90% Identity
- iTF_01095172;
- 80% Identity
- -