Ostr033161.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637570.1:4664994-4669565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.13 13 7.5 0.7 1 23 50 72 50 72 0.95 2 30 0.33 31 6.3 0.1 2 23 100 122 99 122 0.89 3 30 0.00015 0.015 16.8 0.4 2 23 143 165 142 165 0.96 4 30 0.00035 0.033 15.6 2.7 1 23 170 192 170 193 0.96 5 30 0.0001 0.0096 17.3 1.6 1 23 197 220 197 220 0.95 6 30 0.17 16 7.2 0.3 2 23 223 245 222 245 0.95 7 30 0.15 15 7.3 1.4 2 20 251 269 251 274 0.91 8 30 0.0015 0.15 13.6 3.6 1 23 319 342 319 342 0.96 9 30 3.5 3.4e+02 3.0 0.1 2 23 371 393 370 393 0.92 10 30 0.0085 0.81 11.3 0.0 1 23 415 438 415 438 0.92 11 30 3.7e-05 0.0036 18.7 0.9 1 23 443 466 443 466 0.95 12 30 8.9e-05 0.0085 17.5 0.5 1 23 472 495 472 495 0.96 13 30 0.0002 0.019 16.4 1.0 2 23 501 523 500 523 0.97 14 30 0.0013 0.13 13.8 4.6 1 23 527 550 527 550 0.97 15 30 0.42 40 5.9 0.5 2 23 557 578 556 578 0.96 16 30 0.0031 0.3 12.6 3.2 1 23 626 648 626 648 0.96 17 30 0.15 15 7.3 0.1 3 23 677 698 677 698 0.96 18 30 0.0054 0.52 11.9 0.8 1 23 718 741 718 741 0.96 19 30 4.3e-05 0.0041 18.5 0.5 1 23 746 769 746 769 0.96 20 30 0.0016 0.15 13.5 0.9 1 23 774 797 774 797 0.96 21 30 0.00087 0.083 14.4 1.1 3 23 801 822 800 822 0.96 22 30 0.013 1.2 10.7 1.3 2 21 830 849 829 850 0.94 23 30 0.011 1 11.0 3.3 1 23 905 928 905 928 0.94 24 30 1 95 4.8 0.0 2 23 1001 1024 1000 1024 0.94 25 30 2e-05 0.0019 19.5 0.1 3 23 1031 1052 1030 1052 0.94 26 30 0.0036 0.35 12.4 2.8 2 23 1057 1079 1056 1079 0.94 27 30 0.011 1.1 10.9 5.1 1 23 1084 1107 1084 1107 0.96 28 30 2.5e-05 0.0024 19.2 5.0 1 23 1111 1134 1111 1134 0.97 29 30 0.00029 0.028 15.9 0.3 2 23 1141 1162 1140 1162 0.96 30 30 5e-05 0.0047 18.3 2.1 1 23 1168 1190 1168 1190 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGTGAACGATATGGGATTATGAGTCACGCGCACGATTTGGAAACCGAGATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTTCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACGACGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCCGATATAGAAATCAAAATAGACGTATCCGATGTTTCGTGCGAGATTTGTTCAGAAACGTTCCCCTTTTTAGACGAAATTATTGACCATTTGATTTTTAAACACCAACTGCCTTATGAAAAGGACGTAGAGATGCTGTTATCAGCATACAGACTGTTAGATCTTCAGTGTCTCCTTTGCGATAAAACGTTCAATTACTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCAAACAACAGTTTTGAGTGTGCCGAatgtaaaaaacaatttaataagaAGAGGGATTTGGATTCGCACATAAGACTCCATCATAAGAAATGCTATTCTTGTACGAAATGCGATGAAACGTTCCCAACAAACTCCGCGTTGCATATCCACAGGTCTAACTCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTGTTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGATTATAATCAGCGCCAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAGGCCTTTGTAAGACATGCTGCAAATTGCGAACATAAACCTCAGGAAGAAACTGTCATAATAGATGACGATGAAGACAAAAAAGTATCCGtcaaagaaataagaaaaagttTAGCATGCATCTTTAACATGACAACCGCGCTTCCTTTCAAATTCTTTATGAATAGGTTTCGATGTTTCTATTGCACGAAAGACTTCACCTCATGCGAAGATTTAAAAGAACATACTTCGATAGAACATCCTCACTGCGATATATCCTTTAAGTCTATGAGATTAAAGAACAGATATGACGGTGTCCAAATTAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCACCTTGGAAGATTTGAACGATTTGATTGACCATTTGGGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTCAAACTGATTAAAGACAACTATCCTTGCCCTATGTGCGGGGAAGTCTACAGATATTTTGGCGTCCTACTCAAACACGTTAGTGCGTCTCATAGTGGCAATAAACATATTTGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCGGAAACTGCGATCTAGTTTTTGGAACTAATAGTGCGTTAAGAAATCATCAAGGCACCGTTCACGGTACAAAATTAGTTCAATGCTTTGAATGTTCAGAAAAATTCACTTCACAATATTCAATGCAACGACACTTAATCACCTCTCATGGTACGGGACATAAATGCACTTACTGTGATAAGTTATTCACTAAAAACTCTTTCATGATCAACCACGTAAGGAGGTCTCATTTGAAAGAGAAAAATGTAGAATGTTCTGTGTGCTTCGAGAAATTTTTCGACGGTCAAAGGTTGAAAATGCATATGGTTAAACACGTTGGAGAAAGAAACTTCCATTGTGATATTTGTGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGCCGGAAAAACTTGAAAATACTGTTCAACCACACAACAATCATGCCATTTAAATGGCGGGGCAAATACCTTTGCTTCTACTGTGGAAAAAACTATACCGAATACACAGAATTTAGAAAGCATACAAAATCCCACGGACTATGCACCACTAAAGATTACTCCCTCAAACTAATCAAAGGAAACaacatcgaaattaaaatcGACGTCTCAGAAATCGGTTGTGATATCTGTAATGAACCCTTCAGCAAATTCGAAGAAATAATCGATCATTTGATCAGTAAACACAACATGGAATACAACAAAAATATCGATATACCCTTCCAGGAATATCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAACATGTTAACAACGTACACCCGCAGAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAAAGAGACTTGTCTATACATTTGAGGAATTATCACAGACAGGGAGGATACCCCTGCGATTTGTGCTTGAAGAACTTCGATACTCGCCTTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGTGGCTTGCGTTTTGCGTCCCTTTCTCTTTTACAAAAACATGTCCAAGTTGATCACCCCCAAAATGAGAGTAATATGAAATGTAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGTTTAAGACAGCATATAAGCAAATGTAAGGTCAAAATAATTTCTCAGGTCGAACTCCCCCACACTTCTTTTCTAAATGACAGTAACATAGAACctaagaaaaaacaaaatatactaCAAATACGACAGAACATACAGTGCGTACTCAATATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATATTCCTGCTTTTATTGCTCAAAGAAATTCGTTGAATTTGACGAGCTACGTCACCACACTAGCCTTGAACATCCTGTATGCGATTTGAAGTCAAAATGCATGAAGAAATGCAAGGGAGAAAGAATAGCCGTTAAAATTGACATATCTGCATTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAGTCAACCATTTAATAAACGAACATAAGGCGAACTATGATACTTCAATTCCTGGGTGTTTAGAGCCTTTCCGGGTTATAAAAGACAACATGCCATGTCCCATATGCCCGGATACTGTCTTCCGATACTTTGGCATTTTGCTTCGACATATGAACTCGGAACACAGCAACAACAACCGGATCTGTGACTTCTGCGGTCGAAGTTTCCGTAACGCGGCGAATCTAAACGTGCATATAACATACGCACACACAGGTTCCTGCGAATGTGACATTTGTGGGGTCAAATACAAGAACCAGTGGTGTTTGGCGCGACATAGAGCGAGGACACACGATGCGAAGGACCACAAATGTCCTAAATGTCCCGAGCAGTTCCAATCGCAGTAccataaacaaaaacatttaataaaaatgcaCAATGTGGGGCATAAGTGCAGTTATTGCGGAAAAATGTTTACTAGAAACTCCTTCATGAAAGACCATGTTAGACGTACACATTTGAAGGAAAAAAACATTCCTTGTTCCATTTGTAATGAAAAGTTTTTCGATAATTATCTTTTGAGGATGCATATGGTGAAGCATGAGGGGGATAGGAAATTTTGTTGTACTGTTTGTGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAGTTGCAGATTTAA
- Protein Sequence
- MEGERYGIMSHAHDLETEMTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSDVSCEICSETFPFLDEIIDHLIFKHQLPYEKDVEMLLSAYRLLDLQCLLCDKTFNYLRKLISHMNVAHPNNSFECAECKKQFNKKRDLDSHIRLHHKKCYSCTKCDETFPTNSALHIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDYNQRQCGFCNKVLTTKQAFVRHAANCEHKPQEETVIIDDDEDKKVSVKEIRKSLACIFNMTTALPFKFFMNRFRCFYCTKDFTSCEDLKEHTSIEHPHCDISFKSMRLKNRYDGVQIKVDTSSLSCRLCQVTLEDLNDLIDHLGKEHKVKCDFSVESNLQPFKLIKDNYPCPMCGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTNSALRNHQGTVHGTKLVQCFECSEKFTSQYSMQRHLITSHGTGHKCTYCDKLFTKNSFMINHVRRSHLKEKNVECSVCFEKFFDGQRLKMHMVKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSKFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFDTRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVELPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLVNHLINEHKANYDTSIPGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFCCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- iTF_00300464;
- 80% Identity
- -