Cpis039061.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982556.1:5937441-5941517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.16 19 7.3 0.9 1 23 67 89 67 89 0.95 2 32 0.13 15 7.5 0.0 2 23 117 139 116 139 0.92 3 32 0.00011 0.013 17.2 0.6 2 23 160 182 159 182 0.96 4 32 6.2e-05 0.0071 18.0 4.3 1 23 187 209 187 210 0.96 5 32 1.5e-05 0.0017 20.0 0.8 1 23 214 237 214 237 0.94 6 32 0.18 20 7.1 0.4 2 23 240 262 239 262 0.95 7 32 0.19 22 7.0 1.5 2 20 268 286 267 291 0.90 8 32 0.027 3.1 9.7 2.8 2 23 336 358 335 358 0.91 9 32 1.1 1.2e+02 4.7 0.4 2 23 387 409 386 409 0.94 10 32 0.00063 0.072 14.9 0.0 1 23 431 454 431 454 0.92 11 32 0.00012 0.014 17.1 0.9 1 23 459 482 459 482 0.94 12 32 0.00024 0.028 16.2 0.8 1 23 488 511 488 511 0.96 13 32 0.00022 0.025 16.3 1.3 2 23 517 539 516 539 0.97 14 32 0.0023 0.27 13.1 4.6 1 23 543 566 543 566 0.97 15 32 0.015 1.7 10.5 0.8 2 23 573 594 572 594 0.96 16 32 0.74 85 5.2 0.7 1 10 600 609 600 611 0.95 17 32 0.0068 0.78 11.6 1.9 1 23 653 675 653 675 0.96 18 32 0.043 4.9 9.1 0.1 3 23 704 725 704 725 0.96 19 32 0.012 1.3 10.9 2.0 1 23 745 768 745 768 0.96 20 32 4.5e-05 0.0051 18.5 0.5 1 23 773 796 773 796 0.96 21 32 0.0017 0.19 13.5 0.8 1 23 801 824 801 824 0.96 22 32 0.0009 0.1 14.4 1.1 3 23 828 849 827 849 0.96 23 32 0.013 1.5 10.7 1.4 2 21 857 876 856 877 0.94 24 32 0.015 1.7 10.5 3.4 1 23 931 954 931 954 0.93 25 32 5.1 5.8e+02 2.6 0.3 3 23 983 1004 981 1004 0.89 26 32 1 1.2e+02 4.7 0.0 2 23 1027 1050 1026 1050 0.94 27 32 2.1e-05 0.0024 19.5 0.1 3 23 1057 1078 1056 1078 0.94 28 32 0.0038 0.43 12.4 2.8 2 23 1083 1105 1082 1105 0.94 29 32 0.012 1.4 10.8 5.1 1 23 1110 1133 1110 1133 0.96 30 32 2.5e-05 0.0029 19.2 4.5 1 23 1137 1160 1137 1160 0.97 31 32 0.0003 0.035 15.9 0.3 2 23 1167 1188 1166 1188 0.96 32 32 1.1e-05 0.0012 20.4 0.6 1 23 1194 1216 1194 1216 0.98
Sequence Information
- Coding Sequence
- ATGGCTAGgactaaaaaaataacacatacTTCTTCATCCCTCCATGCACTGCCTTGCTATCTCAAAAGTACAAAAAGTCATTTCTTTTCAGATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAACCTACAAATATTGCTCAACAATACAACGTTAATACCCTTTAAATGGCGAAGCAAATACCTCTGCTTCTATTGTGGAGACGATACGAAGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGTAGTGAAAGAGACAGAGCTATACGACTTGTTAAATCAGCTGATGCAGAAATCAAAATAGATGTTTCCGATGTCACTTGCGAGATTTGTTCCGAAAGTTTTCCATTCCTAGACGATATTATCGACCATTTGattttaaaacaccaattaCCTTACGAAAAAGATATAGATATGCCATTGGCCGCGTACAGATTGGTAGATCTCCAATGCCTCCTTTGCGATAAAAGTTTCACCTTTTTAAGTAAATTAATCAGCCATGTGAATACCGATCATCCTAATAACAGCTTTGAGTGTTCAGAATGTAAAAAGACGTTTAACAAGAAAAGGGATTTAGATTCGCACTTAAGATCTCATCATAAGAAATATCATACTTGTACTAAATGTGGTGAAACATTCCCTACGAATTCTGCGCTGCAAATTCATAGGTCTAACGCTCATTCTTCAACATGCAACGTCTGCTTCCAAGTATTTTCGTCAGACGGCAAGAGGTTAGCTCATTTAAAATCGGACCATGATACTGAGCAAAGCAAATGTGGGTTCTGCAATAAAGTTCTAGCAACAAAGCAAGCGTTTATAAGGCATGCTTCAAATTGTGAACATAAACCTAAAGAAGAAACCGTCATAATTGATGACGAGGAAAAAAAGGTGTCCGTCAAAGAAATAAGAAATAGTTTGGCAGCCATATTTAACATGACCACCGCACTTCCTTTCAAGTTCTTTATGAATCGTTTACGTTGCTTCTACTGCACAAGAGACTTTACCACTTGTGAGGAGTTAAAGGAACATTCGCTGAACGAACATCCTCATTGCGATATATCCTTTAAGTCTATGAGGTTAAGAAACAGATATGACGGTGTCCAAATCAAGGTTGATACTTCTTCTCTGTCCTGTAGACTATGCCATATCGAGTTGCAGGATCTGAGCGATTTGATCGACCATTTGACCAAAGAGCATAAGGTTAAATTTGACATGACTGTTGAGAGTAATCTGCAGCCGTTTAAACTGATCAAAGATAACTACCCTTGCCCTATTTGCGGTGAAGTCTACAGATATTTTGGCCTTTTATTGAAGCATGTTAGTGCGTCTCACAGTGGCAATAAGCACATATGCATGTATTGCGGTAAAGCGTTCCGAACGGATCCCAATCTTAGAGCTCACGTGTCCAGGCGACATAAAACCGCTGACAATCACAAGTGTACTACTTGCGATCTGCAATTTCCTACAAATGGTGCGTTAAGAAACCATCAAGGAACTGTCCACGGTACAAAATTAGTTCAATGCTTCGAATGTAGCGAAAAATTCACTTCGAAGTATTCGATGCAACGGCATTTGATTACGTCTCACGGCAGGGGGCATAAGTGCACTTACTGTGATAAACTCTTTACTAAAAACTCTTTTATGGTCAACCATGTAAGGAGGTCTCATTTGAAAGAGAAAAATGTAGAATGTTCTATATGCTTCGAGAGGTTTTTTGACAGTCAGAGGCTGAAAATGCACATGGTTAAGCATGTAGGAGAAAGGAATTTCCATTGCGATATTTGCGGCAAAAAGTTTTTGTGGAAAAGAAATTTAAGAGATGGTCTGCCAGGACCGTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGAAAATACTGTTCAACCACACGACAATCATGCCTTTTAAATGGCGGGGGAAATACCTATGCTTCTACTGCGGACAAAACTATACCGAATACGCAGAGTTTAGAAAACACACGAAATCTCACGGACTTTGCACTACTAAAGATTACTCCCTGAAGCTAATCAAAGGGAATAACGTAGAAATTAAAATCGACGTCTCGGAAATCGGTTGTGACATCTGCAATGAACCCTTCAGCAGATTCGAGGAAATAATCGATCATTTGATCTCGAAACATAATATGgaatacaacaaaaatattgatataCCCTTCCAGGAGTACCGATTAGTCGATTTTCGATGTCTGCACTGCGAAGAACAGTTTACCTACTTCGGGTACTTAGTTAAACATGTCAACAACGTTCACCCACAGAACTGCTTCATTTGCGATGATTGTGGAGTCACTTTTAACAAGAAAAGGGATCTGTCAATACATTTGAGGAATTATCATAGACAAGGAGGATACCCATGCGATTTGTGCTTGAAGAACTTCGAAACGCGACTTATGTTGCGGAGGCATCAAAATAATATGCATTTTAGGCACTGCAAGAGCTGCGGTTTACGTTTCGCGTCGCTATCCCTCTTACAAAAACATGTCCAAGTTGATCATCCCCAAAACGAAAGTAATATGAAGTGTAGTTACTGCTCCAAGGAGTTTCACACTTCTTTAGGTTTAAAACAGCATATAAGCAAATGTAAGGTCAAAATAATTTCTCAGGTCGAACCCCAAACTTCTTTTCTGAACGACAATAACATAGAACCAAAGAAAAAGCAAAACATCCTACAAATACGGCAGAATATACAATGTGTACTTAACATGTCGACTGCTGTGCCTTTTAAATTCTTTTCCAAATATTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAGTTACGCCACCATACTACTCTGGAACACCCTGTCTGCGATTTGAAGTCCAAATACATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATCGACATATCTACTTTAGCTTGCAAAATATGTTGCCTTTCTATGACTAACTTAGAAAATTTGATCAATCATTTAATAGCAGAACACAAGGCGAACTATGATACGTCAATAACTGGCTGTCTAGAACCGTTTAGGGTTATAAAAGACAACATGCCGTGTCCTATATGCCCGGACACCGTCTTCCGATACTTCGGGATTTTGCTTCGGCATATGAACTCCGAACATAGCAACAACAATAGAATCTGTGACTTTTGCGGCCGAAGTTTTCGAAATGCTGCTAATTTAAACGTTCATATTACATACGCTCATACAGGTTCTTGCGAATGTGACATTTGCGGTGTCAAATACAAGAACCAGTGGTGTTTAGCGCGACATAGAGCGAGAACACACGACGCTAAAGACCATAAATGCCCAAAGTGTCCGGAACAGTTCCAGTCACAGTACCACAAACAAAAACATCTAATAAAAATGCATAACGTTGGCCACAAATGTAGTTATTGCGGCAAAATGTTCACTAGGAACTCTTTTATGAACGACCATGTGAGGAGAACACATttgaaggaaaaaaatattccatGTTCGATATGCAATGAGAAGTTCTTCGATAATTATCTTCTAAGGATGCATATGGTGAAACACGAGGGTGATAGGAAATTCAGTTGTACTGTTTGTGGGAAAGCATTTTTGAGAAGAAGTAATTTGAGCTCGCATATGGAAATGCATAAGAAGTATGGACACGTGCAAGTACAGATTTAA
- Protein Sequence
- MARTKKITHTSSSLHALPCYLKSTKSHFFSDLETEVTKHSASYLRRRNLQILLNNTTLIPFKWRSKYLCFYCGDDTKTPDRLRKHTKGHGPCSERDRAIRLVKSADAEIKIDVSDVTCEICSESFPFLDDIIDHLILKHQLPYEKDIDMPLAAYRLVDLQCLLCDKSFTFLSKLISHVNTDHPNNSFECSECKKTFNKKRDLDSHLRSHHKKYHTCTKCGETFPTNSALQIHRSNAHSSTCNVCFQVFSSDGKRLAHLKSDHDTEQSKCGFCNKVLATKQAFIRHASNCEHKPKEETVIIDDEEKKVSVKEIRNSLAAIFNMTTALPFKFFMNRLRCFYCTRDFTTCEELKEHSLNEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCHIELQDLSDLIDHLTKEHKVKFDMTVESNLQPFKLIKDNYPCPICGEVYRYFGLLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKTADNHKCTTCDLQFPTNGALRNHQGTVHGTKLVQCFECSEKFTSKYSMQRHLITSHGRGHKCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSICFERFFDSQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGQNYTEYAEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLHCEEQFTYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLKQHISKCKVKIISQVEPQTSFLNDNNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTTLEHPVCDLKSKYMKKCKGERIAVKIDISTLACKICCLSMTNLENLINHLIAEHKANYDTSITGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMNDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- iTF_01095158;
- 80% Identity
- -