Ostr013074.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_951800025.1
- Location
- OX637548.1:2118226-2132220[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.063 7.8e+02 0.2 0.5 44 91 54 102 36 107 0.75 2 4 3.6e-26 4.4e-22 79.8 8.0 1 90 122 207 122 212 0.90 3 4 1.8e-08 0.00023 21.6 5.6 222 297 219 286 208 289 0.80 4 4 3 3.7e+04 -6.2 11.7 1 143 285 331 285 358 0.45
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCTGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGTGGGGACGCCTTCACTGACGGAGATTTTTGTGATTCCGATGACGAGACGATCGTCGAACGCCTTGATGAAGCTAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTACTAATGGTGACTCTAATGGTAGTGTCGATGAGCAGCCCAGAATGAATGGTCGTAAAAATAGCGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCAGATTTGCGCCGAGATTCACACGGTGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCAGCGCGGGCTGAAGCGCGAGAAATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCTGACAAGGCATACGATATGTATGCTGGCAAGACACCAGAGACGGTGGGTCGTCGAGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCGGTTGATGATGGCTTCAGCATCAAGGACCTTAGGGTACGTAGCATTACTAGACTTAACCCTGAAACTGTGTACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTAGAGTCAGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGCGCCGCCAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGAGACAGTCCGCAAGGCGGTGTCGGAAGCCAAGGGCCGAGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCGGCCCATGTGGCGCGCCTCGAGGCGCAGCTGGCGAGGTCGCGCGCGCGCCAGGAGCACCAGGACGGCCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTTAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFCDSDDETIVERLDEAKPAHIPINEAVKDDIQKSAATNGDSNGSVDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRVRSITRLNPETVYVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARSRARQEHQDGHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -