Ostr021047.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637556.1:1941239-1942654[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-07 0.00027 21.6 0.0 2 37 13 49 12 54 0.91 2 2 4.5 3e+03 -1.0 0.1 17 25 106 114 105 114 0.87
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGctgttgaaaatgttttgagTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTATCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATGAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGGTAGAGCGATTTGTTCAAACCCGGTTATTTTAGaagatttttatgaaaaattagaaaaacagTTAAATGAACATGACATTCCACCCGAAAGAATATGGAACTGCGATGAAACTGGTCTGATGTTTGTCAACAAACCCAACAAAATTGTGACAAGCATTGGAAAAGAATATGTTTACAACAGAACATACGCAGGAAAGGGTACGACAACCACATTATTGGCGTGCATAGATGCGACAGGATGTTACATCCCCCCATTTATTATATTCAAAGGTGTAAGAATCATACCACAACTGACAAAAGGATTTATGCCAAACACCCAAGTACGATTTTCTCGAAAGGGATGGATCACGGGTGAACTATTCCTAGATTGGTTAAAATTCTTTGTTCGATGTATCCCTCCAGCAAGACCCGTTCTATTGATAATGGACTCACACGCCAGTCACGTTACGCCACCTGTAATGGATTACGCTCGATCACAacaaataatattgtttacAATACCTTCTCACACGAGTGCGATTCTTCAACCACTTGATGTCAGTGTTCATCGACCTCTGAAAGTAGCCTGGAGGACAATAATCGAAACCCACAAAATGGAAAATCCTTGCCACATCCCAAACCGCTAtgattttcataaattttttacCCCTGCATTTGAAAAAAGCTTCACGCCATCAAACATGCGAGCTGGGTTAAAAAAAGCGGGTATCTATCCGTTAAACAGAACAGCTGTGAATCCACTGGCACTTGCTCCGTCAAAGTTGACAGACAAACCATTTCCAGAATCGGCAGAAGAGGTCACACTTCATAAAGATGAACAAACTCAAATTTTAGAGGAAATCGTATATTGCAACATTGACCAAGAAAATGGGTCCCTGGAGACAGATTACCTTGTAGATCTTCATTCAGAGTGTTCTCCATTAGAATGTGAAGAAAATGGATGTCTAAGAACAGGTGACTCTCTGTGA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVIKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYEERYGLSLRTPENLSAGRAICSNPVILEDFYEKLEKQLNEHDIPPERIWNCDETGLMFVNKPNKIVTSIGKEYVYNRTYAGKGTTTTLLACIDATGCYIPPFIIFKGVRIIPQLTKGFMPNTQVRFSRKGWITGELFLDWLKFFVRCIPPARPVLLIMDSHASHVTPPVMDYARSQQIILFTIPSHTSAILQPLDVSVHRPLKVAWRTIIETHKMENPCHIPNRYDFHKFFTPAFEKSFTPSNMRAGLKKAGIYPLNRTAVNPLALAPSKLTDKPFPESAEEVTLHKDEQTQILEEIVYCNIDQENGSLETDYLVDLHSECSPLECEENGCLRTGDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907826;
- 90% Identity
- iTF_00907826;
- 80% Identity
- -