Lsem000128.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376199.1:1616165-1617859[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-07 0.00014 22.0 0.0 2 39 13 51 12 55 0.93 2 2 3.7 2.5e+03 -1.2 0.1 17 25 106 114 105 114 0.87
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAAACCGATCTCAAAACCGCCGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTATGATTCCATGGTCGACATTAAAAGAGAATGTGAAGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATGGTAAGTTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGCAAAATCTTTCAGCAGGTAGAGCGATTTGTTCAAACCCGGTTATTTTAGAAGATTTTTATGAAAAATTAGAAAAACAGTTAAATGAACATGACATTCCACCCGAAAGAATATGGAACTGCGATGAAACTGGTCTGATGTTTGTCAACAAACCCAACAAAATTGTGACAAGCATTGGAAAAAAATATGTTTACAACAGAACATACGCAGAAAAGGGTACGACAACCACATTATTGGCGTGCATAGATGCGACAGGATGTTACATCCCTCCATTTATTATATTCAAAGGTGTAAGAATCATACCACAACTGACAAAAGGATTTATGCCAAACACCCAAGTACGATTTTCTCGAAAGGGATGGATCACGGGTGAACTATTCCTAGATTGGTTAAAATTCTTTGTTCGATGTATCCCTCCAGCAAGACCCGTTCTATTGATAATGGACTCACACGCCAGTCACGTTACGCCACCTTTACTGGATTACGCTCGATCACAACAAATAATATTGTTTACAATACCTTCTCACACGAGTGCGATTCTTCAACCACTTGATGTCAGTGTTCATCGACCTCTGAAAGTAGCCTGGAGGACAATAATCGAAACCCACAAAATGGAAAATCCTTGCCACATCCCAAACCGCTATGATTTTCATAAATTTTTTACCCCTGCATTTGAAAAAAGCTTCACGCCATCAAACATACGAGCTGGGTTCAAAAAAGCGGGTATCTATCCGTTAAACAGAACAGCTGTGAATCCACTGGCACTTGCTCCATCAAAGTTGACAGACAAACCATTTCCAGAATCGGCAGAAGAGGTCACACTTCATAAAGATGAACAAACTCAAATTTTAGAGGAAATCGTATATTGCAACATTGACCAAGAAAATGGGTCCCTGGAGACAGATTACCTTGTAGATCTTCATTCAGCGTGTTCTCCATTAGAATGTGAAGAAAATGGATGTCTAAGAACAGGTGACTCTCTATGTGATCCTCTTCATTCAGCGGGTTTTCAATTTGAATGTGAAGAAAATGGGTCTTTGAAGATAGATGATCCTGTGTGTTATCCTCCTCATCCAGCGGATTCTCAATTTGAATGTGCCAAGCTACCTGTCCAGCTTGAAGAAGACGTAATTATGGATGATGTTCCGGGTCAGAATGCGCCCATCATTTATCAACAAAAAATTAAAATAACTGATAGTACAGATATATTTGAGAACGACAATTCTGCAGAAAAATGTTGTGAAATATTAGTGTTGCAATGTTAA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFMIPWSTLKENVKKYKTLREGNQDAQMVSSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYKERYGLSLRTPQNLSAGRAICSNPVILEDFYEKLEKQLNEHDIPPERIWNCDETGLMFVNKPNKIVTSIGKKYVYNRTYAEKGTTTTLLACIDATGCYIPPFIIFKGVRIIPQLTKGFMPNTQVRFSRKGWITGELFLDWLKFFVRCIPPARPVLLIMDSHASHVTPPLLDYARSQQIILFTIPSHTSAILQPLDVSVHRPLKVAWRTIIETHKMENPCHIPNRYDFHKFFTPAFEKSFTPSNIRAGFKKAGIYPLNRTAVNPLALAPSKLTDKPFPESAEEVTLHKDEQTQILEEIVYCNIDQENGSLETDYLVDLHSACSPLECEENGCLRTGDSLCDPLHSAGFQFECEENGSLKIDDPVCYPPHPADSQFECAKLPVQLEEDVIMDDVPGQNAPIIYQQKIKITDSTDIFENDNSAEKCCEILVLQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094865;
- 90% Identity
- iTF_01094865;
- 80% Identity
- -