Olat015799.1
Basic Information
- Insect
- Oligia latruncula
- Gene Symbol
- Znf296
- Assembly
- GCA_948474745.1
- Location
- OX419683.1:11219801-11232339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 10 7.2 2.5 1 21 72 92 72 93 0.95 2 13 0.00036 0.025 15.4 0.6 2 20 106 124 105 128 0.95 3 13 0.074 5.1 8.1 1.2 2 23 168 189 167 189 0.95 4 13 7.5 5.2e+02 1.8 0.2 2 23 266 288 265 288 0.87 5 13 0.008 0.55 11.1 0.3 1 20 293 312 293 314 0.92 6 13 2.9e-05 0.002 18.8 0.8 1 23 322 345 322 345 0.98 7 13 2.1e-05 0.0014 19.3 2.2 1 23 366 388 366 388 0.98 8 13 4.9e-06 0.00034 21.2 3.8 1 23 395 417 395 417 0.99 9 13 1e-07 7e-06 26.6 2.3 3 23 431 451 429 451 0.96 10 13 2.3e-05 0.0016 19.1 3.2 1 23 457 479 457 479 0.99 11 13 2e-06 0.00014 22.4 2.6 2 23 486 507 485 507 0.96 12 13 1.2e-07 8.3e-06 26.3 1.4 1 23 513 535 513 535 0.99 13 13 0.0029 0.2 12.5 0.1 1 23 541 563 541 563 0.97
Sequence Information
- Coding Sequence
- ATGTACCTTAGAGGGATATTAAAAAAAGAAAGCTCAACATCTACTAAAGTTTTAAGTCAAACTACATCAGGTGTGAAGACCGAAGATTTATCATCTCATGATAATGACGACTACGCCGATAGTGATTTCAATGTTTCCCTAAGTAGTGGGCCAGATTTACATGAACAAGAAGCTGTTAAAATTGAGCATGAGAGCTTAGAACGCAAGTCATGCTTTGTGTGCAAAAGCTGCTTAGTCGTTTTCAATACACATTGTAAGTTACAGGAACACCAAAAGATATGCATAAAAGTTGAGTGTGATGAAACCAACCGTACTTACTGCCCACTTTGCGGTACTTGCTATAATGGTGCAGAGAATTTAACGAAACATATGTGGGAAAATCATGCAGACCTTATGGGCCCAAAAAAGAGAGGCAGACCTAAGAAGATGTTAACTAGTACTATTCTTAACAAGTTGTCAGAAAATGGATTTTGCATAACATCAATGCCAGCTAAAAAGATTGAGTGCGCATTTTGCAAGCAACATTTCCAAACCAAAGAAGAATTAGGATCACACTCTATAACTCATAAAGATATGAAAGTATTGCGTTGTGACCTTTGCAAGAAAATATACCTTGATAGGAAAAAGTTTGATCATCATGACTGTATTGAAGAGAAAGCCGATGTTAACAATGCAGAAAATGATACGGCTAAACCAGAAACCAATGAAAAAAAGCCACTAAATTTTCTGTCAGAAATTACACTGGGAGAATTTCTAGACCCGAACATGGATATGGAGAACTTCAACTTGCTTATAGTATGTAGTGCTTGTAGCTGCATATTGCAATCAGAATCGGATCTCATTAACCATCGCGATGCTGAACACCCGGAGTTGTCTCATCGGTGCAACCTCTGCACTAAGGTGTTTGCTTCTTTGCGATCAGCGGCGCGCCACAGAAGCATTTGTAAGCAAATTGAAAGAAAATATAAATGTAACACGTGTGGACTGAAATTCGCTTATGAAATATCTTTGAATAAGCATATCTTAAGATATCATGAGGGACAAAGCGTGTCGGTTAAATTTATTGATTCCAAAACCAAACGAGAAGAGAGACAGTTTCAGTGTGATACTTGCAATAGAAGTTTCTACAAGAGAGACTTGCTAGTTAAACATACTAAAATACACATGCCAATCGAAAACTTCTTCCAATGTGATGTTTGTGAAAAGAAGTTTCACAGGAGTGACAATCTTCGCTCTCACAAACGAGTTCATCAGCCGCAGCGCGAAAAGAGTTCATCTAGTAATTGCTTATGCCTTTACTGTGGCCGCAGTTTCTCTAACTCGTCGAACTTAATCGTACACATGCGGCGTCACACTGGAGAGAAGCCCTACAAATGTGATTTTTGTGGCAAAGGTTTTCCAAGATCTTCCGACCTTCAGTGTCACAGGAGATCTCACACTGGAGAGAAACCTTGTATATGCCGTGTCTGTGGTAAAGGTTTTTCGCGCAGCAATAAGTTGTCACGCCACATGCGCGTGCACACTGGCCAGCGGCCGTACAAGTGCACCTACTGCGAGAAGGCGTTCTCGCAGAGCAACGATCTCAACCTGCACATACGCCGACATACTGGCGACCGGCCCTACATCTGCGAAGTGTGCGGCGACAGATTCATACAGGGTACCGCGTTACAGAATCACAGAAGAGCTCATGGTCATTTTCCTGCTCCTCCTGCTGCAGCTCCTTCCGAGGTGCAAGCACTGACTTTTACAGTTCAGAGTATAAGCCATAATAATAGTCACTAA
- Protein Sequence
- MYLRGILKKESSTSTKVLSQTTSGVKTEDLSSHDNDDYADSDFNVSLSSGPDLHEQEAVKIEHESLERKSCFVCKSCLVVFNTHCKLQEHQKICIKVECDETNRTYCPLCGTCYNGAENLTKHMWENHADLMGPKKRGRPKKMLTSTILNKLSENGFCITSMPAKKIECAFCKQHFQTKEELGSHSITHKDMKVLRCDLCKKIYLDRKKFDHHDCIEEKADVNNAENDTAKPETNEKKPLNFLSEITLGEFLDPNMDMENFNLLIVCSACSCILQSESDLINHRDAEHPELSHRCNLCTKVFASLRSAARHRSICKQIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDSKTKREERQFQCDTCNRSFYKRDLLVKHTKIHMPIENFFQCDVCEKKFHRSDNLRSHKRVHQPQREKSSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPAPPAAAPSEVQALTFTVQSISHNNSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072259;
- 90% Identity
- iTF_00449489;
- 80% Identity
- -