Oiva032239.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000021.1:18398901-18404322[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.088 8.8 8.4 2.3 1 21 75 95 75 96 0.96
2 26 8.7 8.7e+02 2.2 0.3 3 23 125 145 124 145 0.91
3 26 0.0037 0.37 12.8 1.8 2 23 168 189 167 189 0.97
4 26 0.025 2.5 10.1 0.1 1 23 193 215 193 215 0.95
5 26 0.34 34 6.6 0.6 1 19 220 238 220 243 0.77
6 26 0.049 4.9 9.2 0.1 1 23 249 272 249 272 0.94
7 26 0.0038 0.38 12.7 2.7 1 23 279 302 279 302 0.97
8 26 0.00021 0.021 16.7 0.9 1 23 309 331 309 331 0.96
9 26 2.9e-06 0.00029 22.5 4.0 1 23 337 359 337 359 0.98
10 26 0.00035 0.035 16.0 0.5 2 23 363 385 362 385 0.96
11 26 0.0012 0.12 14.3 0.2 1 23 463 485 463 485 0.97
12 26 7.2 7.2e+02 2.4 0.3 2 23 512 534 511 534 0.92
13 26 0.018 1.8 10.6 0.9 1 23 556 578 556 578 0.98
14 26 0.00026 0.026 16.4 0.3 1 23 582 604 582 604 0.97
15 26 0.083 8.4 8.5 0.1 1 22 638 659 638 661 0.87
16 26 5.1 5.1e+02 2.9 0.2 1 15 668 682 668 685 0.83
17 26 0.0031 0.31 13.0 4.5 1 23 721 743 721 743 0.97
18 26 10 1e+03 2.0 3.1 2 23 767 789 766 789 0.91
19 26 0.021 2.1 10.4 5.1 2 23 812 833 811 833 0.96
20 26 0.00022 0.022 16.6 2.3 3 23 839 859 838 859 0.98
21 26 0.1 10 8.2 3.5 1 23 869 892 869 892 0.96
22 26 0.002 0.2 13.6 1.8 1 23 898 921 898 921 0.96
23 26 0.084 8.4 8.5 1.7 1 23 927 950 927 950 0.97
24 26 0.00011 0.011 17.5 0.5 1 23 956 978 956 978 0.98
25 26 2.4e-06 0.00025 22.8 0.9 1 23 984 1006 984 1006 0.99
26 26 0.00012 0.013 17.4 5.4 1 23 1012 1034 1012 1035 0.96

Sequence Information

Coding Sequence
ATGTATCGCAATAAATTATTGAGAGAACGCGCCCAAACAGAAAACGAGAGCTCGATAAAAATTGAGACAACAGAAAATTTACAATTAGGTGAAACGTTAAAAGTCGAAAAACGACGCTATCAGAGAAGCGCAAGAGCCGAAGCGAGGTTTGTGACGAAAAAGAACGCCGGCGCCTTGCTCGAGTGCTGGTCTCTGTGTCCTTTCCGATGGAAAAGGAACAGGTTCAAATGCGCATACTGCGAGGACCACTTCACTGATTGCACAGAGCTGAGGAGCCATGTCCGCCTGTGCTCGACACAGCACGGCATCAAAGACATATACAGCAAATTCAAAGAAATGACCCTCATCAATGTGGACATCACTGAAGCGTCATGTAGAATATGCGCCATGCCGTTTCGCGAGGTGAACGAAATGCGTCACCACGCCATCGAACACGGATATGACTTCGACACCTCACAACCGGATGGGGTCCTACCCTTTTGCTTGGATAAAGAGTTATGGCGATGCGTTATTTGCCATGAAACGTTCAATAACTTCCTGAAGCTCTACGAACATATGAACACGCACTACCAGCATTATATTTGCGCGACTTGCGGCAAAGGCTACATGACAGCACCGCGGTTGAGAAAGCATTCAGAGGTGCACATTACAGGGACGTTTCCATGCGATAAATGCAAGCGCGTCTTTACGATGCGAGCAGCAAGGGATTATCATAAGAGTAACGCTCACGCCAAGGGTCCGAGATACGAATGTCCACAATGTGATATGAGATTTGGGGGCTATTACGAAAGAATGAATCATCTAAACGAAGCGCACAGAGAAAAGGAAGTGCTCTATAAGTGTACTCATTGCGAGCTCTCCTTCAAAACCAGCGGGAAACGCGCCACGCATGTCAAATCCATACACTTTCCTCGACAACGTAATTTCGCCTGCCCTTTTTGTAAATGGTTTTTCAAAACTGGGTATGAATTAAAAAGGCACATAGTTAAGCATACGGGAGAGAAGAACTTTTGTTGTACGCTTTGCGGGAAGACCTTTCCGAGAAATAGGGCGTTAAGGAAACATTTGAAAACGCATGAGGATCTGAATTGTAAATGGTGCGGGGTTATGTTCAGTCAGAAGACATTGTTGGTGGAGCATTTCCGGACCACCCATCCGGAGATGAGTTCCGCAAATGCGGATTCGGGAGATGTTGTGCTAGGAGTTAAACGTGTTAGAAAGTTAAAGGAGAATGTGTGCGCCAGACAAATGCGTCGGAGACGACGTGCGAACAATGAACTATCTGAAGAATCTGAGAAACGCATAGCTAAAACGATGATGCGCAAAAACGCCATGACCATTCTAGAATACTCAACAGCGTGGGCCTTTCGTTGGTTCCACAGCGCATTTTACTGTTCATATTGCGATTTAAAATTTGTAGAGCCTGTACTCTTGCGTGATCATGTACTTAGCCATTTAAACGACGTCCCAACGAAGAGAATATTCTCGAAACTAACGGAAAATAATATGGTCAAAGTAGATGTTACGAACTTAAAATGTAGATTGTGCAAACATGGAATAGAGAGTATTGATGCATTGAAATCCCATTTGGTATCAGTCCACGATAAACTATTCCATACTGACTATAATGACGGCGTCCTCCCTTTCAAATTAGAAGCGGATAGGTTTAACTGTCAAAAATGTCCGCTATATTTCACAAGCTTCGCCAAAATCAATGAACATATAAACACTCATTACCAAAACTATATTTGCGACGCCTGTGGAAAAGCTTTCGTATCTAAGTCGCGTTTTAGAATACACGTACAATCGCACGAAGTTGGTGCCTTTCCTTGCGGTGATTGTGACGAAGTTCTACAAACTAGGGCTGCTAGGATGTGCCATAAACTAAGAGTTCACAAGAAAGGTGTTAGATACACTTGTCCGAGATGCCCTGAGGTCTTCACGGCGTATTACGCGAGAGCGAAACACTTAGTCGAAGGCCATGGTCAACAGATGAGACACTATGAGTGTTCCGCGTGCGGGAAATTGTTCCAGACGAGCTggACGGTCAAGAAATATGTTTGGAAACGCCGACGCAGGGTATATAACGACCATAGACATAATGCAGCTATAATTATAGAGTTCTCAAACGTATGTCCATTTAGATGGAAACGAGGCGCATTTACCTGTTCCCACTGTCCAAGAACATTCGGCCATTTCGACGATCTTTACAATCATACTCAAGAACATTCTGACCCATTAATGGCGATGCAATACGCTCGACCTTACGACACCATTAAAGTGGAAGTCACTGATCTCAAATGTACCATATGTCACGATAAAATGAATGATTTGGATCACCTCAAAGATCATCTTTTCAATAGTCACCAACAGCCCATAACCAAGGATTTGGACATTGGTGTAACGCCGTTCATTTTGCGGAACAACGAAATGACTTGCGCGCATTGCTCGCAGTGCTTCTCACTATTTTCTAAACTTAACAGTCATATGAACGAACATTATCCGAATAACATTTGCTCTCACTGTGGAAAAGCCTTCACTGCCGCCCATAGGTTAAAAGCGCATCAGCTCACTCACGAATCAAGCCGAACACAAGACCAAACCCATAAATGCACCAAATGCGACGAAATTTTCGAGACAAAACTCTTGAGAAATTATCACATAAACAAAAAACATGCTCCAGAAAATCGTTACAGATGCCCGTATTGCAACCTGTTGTTCAAACGCTATTCAGAGCGATCGCGTCATCTGAAAGAGTTGCATAACCAAAACGTGGAGTATCCTTGCCATTTGTGTCCGGCTATTTTCGCCTTATGTAACCAAAGGACCAAGCATATAAGAAACGTTCACATAAAGCATAAGCAGTTCCAGTGTGATCGCTGCCCTAGCAAATTCGTTACGGCCGGCCAATTGAAGAGTCATATGATAAAACATACTGGCTTAAGAGAGTTCCAATGCGGTGTCTGCAAAAAGAGTTACGCACGGTCTCGGACTTTGAACGAGCATATGAGAATACACAACAATGACAGGAGATTTGTGTGCGAGTACTGTAATAACGCTTTCGTCCAGAAGTGCAGTCTCAAGAGTCATATGAAGACTCACCACCCTAGTGCGGAGATTTCTAAGATCTCTATTGATTga
Protein Sequence
MYRNKLLRERAQTENESSIKIETTENLQLGETLKVEKRRYQRSARAEARFVTKKNAGALLECWSLCPFRWKRNRFKCAYCEDHFTDCTELRSHVRLCSTQHGIKDIYSKFKEMTLINVDITEASCRICAMPFREVNEMRHHAIEHGYDFDTSQPDGVLPFCLDKELWRCVICHETFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCKRVFTMRAARDYHKSNAHAKGPRYECPQCDMRFGGYYERMNHLNEAHREKEVLYKCTHCELSFKTSGKRATHVKSIHFPRQRNFACPFCKWFFKTGYELKRHIVKHTGEKNFCCTLCGKTFPRNRALRKHLKTHEDLNCKWCGVMFSQKTLLVEHFRTTHPEMSSANADSGDVVLGVKRVRKLKENVCARQMRRRRRANNELSEESEKRIAKTMMRKNAMTILEYSTAWAFRWFHSAFYCSYCDLKFVEPVLLRDHVLSHLNDVPTKRIFSKLTENNMVKVDVTNLKCRLCKHGIESIDALKSHLVSVHDKLFHTDYNDGVLPFKLEADRFNCQKCPLYFTSFAKINEHINTHYQNYICDACGKAFVSKSRFRIHVQSHEVGAFPCGDCDEVLQTRAARMCHKLRVHKKGVRYTCPRCPEVFTAYYARAKHLVEGHGQQMRHYECSACGKLFQTSWTVKKYVWKRRRRVYNDHRHNAAIIIEFSNVCPFRWKRGAFTCSHCPRTFGHFDDLYNHTQEHSDPLMAMQYARPYDTIKVEVTDLKCTICHDKMNDLDHLKDHLFNSHQQPITKDLDIGVTPFILRNNEMTCAHCSQCFSLFSKLNSHMNEHYPNNICSHCGKAFTAAHRLKAHQLTHESSRTQDQTHKCTKCDEIFETKLLRNYHINKKHAPENRYRCPYCNLLFKRYSERSRHLKELHNQNVEYPCHLCPAIFALCNQRTKHIRNVHIKHKQFQCDRCPSKFVTAGQLKSHMIKHTGLREFQCGVCKKSYARSRTLNEHMRIHNNDRRFVCEYCNNAFVQKCSLKSHMKTHHPSAEISKISID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00954803;
90% Identity
-
80% Identity
-