Oiva007382.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- GCFC2
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000005.1:4889078-4897910[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-05 1.1 10.3 0.0 4 39 199 234 196 238 0.89 2 4 7.6e-05 0.96 10.5 0.0 4 39 299 334 296 361 0.91 3 4 7.6e-05 0.96 10.5 0.0 4 39 366 401 363 428 0.91 4 4 0.00011 1.4 9.9 0.0 4 39 433 468 430 488 0.86
Sequence Information
- Coding Sequence
- ATGGCGGGCGCGGTGTCCGCGCTGGCCGACACGCTGCCGCGCGCGGGCGAGctgcgcgcgcgcgcgctgcgccgGCTGGCGGCGCTGGCGCAGCTCGCGCTCACGCGGCTGCACAGCGACAACCCCTTGCATTTgctaggagtatcaacatacatacatagtagatGTATATGCGGGTACATTACCGACCTTGTTGAGTGTTTAGACGAGAAGATGCCCGAGTTGGAAACGTTGGAGTCCCGAGCGCTGGCGCTCCATCGCCGTCGCTGCGAGTTCCTGGTGGAGCGACGACGGGCGGACGTGCGGGACCAGGCCCAAGACGTTCTTGCTTTAGCAGCCCGCGCCGGCGCGGCTAAACCCGTGGATTCAGAGGAAAAGAGACAACGCGTGGCGGAGCGGGAGGGAAGGAGACGGGCGCGGAGGTTGAAGCGAGAGAGTGCGGGGACTGCCTCCGCGCATCGCGACGGCGACTCCAGTGACGACGAGCTGCCTCCTGCGCAGACGCACCACGCGCAGCAGGAGACAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCGGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTAGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCGGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCGGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGACACCAGGTGAGACATATATTGTAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCGGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGACACCAGGTGAGACATATATTGTAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCGGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGAACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGGACTACGCAAGCTGGGCCAGCAATGGATATCGCACATTGCATCAGCTTTCTGTAACACATGTGATCGTGATAACAGATAAAAGATATGCAGTCAGTGTTAGCGACTGA
- Protein Sequence
- MAGAVSALADTLPRAGELRARALRRLAALAQLALTRLHSDNPLHLLGVSTYIHSRCICGYITDLVECLDEKMPELETLESRALALHRRRCEFLVERRRADVRDQAQDVLALAARAGAAKPVDSEEKRQRVAEREGRRRARRLKRESAGTASAHRDGDSSDDELPPAQTHHAQQETEAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQKQFARSPGGCSRTRCRRGATCAACARAWHACGAGSPRSTTTQAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQTPGETYIVEAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQTPGETYIVEAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDANVAECLPKLLAPYVRHQDYASWASNGYRTLHQLSVTHVIVITDKRYAVSVSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -