Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.00015 2 9.5 0.0 10 39 3 32 1 60 0.92

2 3 3.8e-05 0.49 11.4 0.0 4 39 64 99 61 127 0.91

3 3 1e-19 1.3e-15 59.2 0.0 4 190 131 301 128 308 0.79

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.00015	2	9.5	10	39	3	32	1	60	0.92
2	3	3.8e-05	0.49	11.4	4	39	64	99	61	127	0.91
3	3	1e-19	1.3e-15	59.2	4	190	131	301	128	308	0.79

Coding Sequence: ATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGACACCAGGTGAGACATATATTGTAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGACACCAGGTGAGACATATATTGTAGAAGCAATTCGCGCGCTCTCCGGGCGGCTGTTCGCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCACGCCTGCGGCGCCGGCAGCCCGCGCTCTACAACGACGCGTACGTGGCCGAGTGCCTGCCCAAGCTGCTAGCGCCCTATGTTAGACACCAGTTGATATTATGGAATCCGCTGGCGGACGAAGATAACGAGGACTATGAGAAAATGGACTGGTACAAATGCCTGATGATGTACGGCGTCCGGTCCGAGAAGATAGCGTCGGACTCAGACGAGTCTTCGTCCTCGGACTCAGAGGCTCACGTACCTCACGGCGCTGTGCGCGTGACTGAGGACTCGGTGCGGGAAGACCCAGACCTGATGCTGGTGCCTACGATTATTGATAAGGTTGTGTTGCCGAAAGTTACTGAAATCGTTGAGCACGCGTGGGACCCGATGAGCGTGCGCGCCTGCGTGCGGCTGCGGCAGCTGCTGGTGCGCGCGTGCGAGCTGCCCGCGCACGCCGCGCTCGCCCGCCTCGCGACCGCCGCGCGCGCGCGGCTCGCGCTAGCTCTCAACGCGGACGTGTTCCTGCCAGCCCTGCCGCCCCAGTGA
Protein Sequence: MARLRRRQPALYNDAYVAECLPKLLAPYVRHQTPGETYIVEAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQTPGETYIVEAIRALSGRLFADALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLMMYGVRSEKIASDSDESSSSDSEAHVPHGAVRVTEDSVREDPDLMLVPTIIDKVVLPKVTEIVEHAWDPMSVRACVRLRQLLVRACELPAHAALARLATAARARLALALNADVFLPALPPQ

Sequence clustering based on sequence similarity using MMseqs2