Oorn105584.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- Trl
- Assembly
- GCA_963969285.1
- Location
- OZ017741.1:28182809-28187513[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5 7.9e+04 -3.0 0.6 5 16 197 208 193 211 0.75 2 2 5.9e-33 8.4e-29 102.6 1.9 12 54 270 312 262 312 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTGCCTATAAATTCGCTGTACTCGCTAACGTGGAGCGACTATGGGACGTCGCTCGTGTCGGCCATTCAACTTTTACGCTGTCATGGCGATCTTGTCGACTGCACTCTGGCGGCGGGCGGGCGAAGCTTTCCCGCACACAAGATCGTCCTTTGTGCAGCGAGTCCGTTCCTATTTGATTTGCTGAAGAATACTCCGTGTAAGCATCCTGTTGTAATGTTAGCAGGTGTGAATGCAAACGATTTGGAAGCATTACTCGAATTTGTTTACCGTGGTGAAGTGAGTGTTGATCATTCGCAGCTACCATCATTGTTACAGGCCGCGCATTGTTTAAATATTCAAGGACTGGCTCCACAAACGGTTACGAAGGATGATTATACGACGCAAATTCAATTGCATCCTATGATGCAGCAACATTACACGGATCAGGATCAGGAACAATTGATAGCAACAATAACGGCACCACAGCAACACACAGTTCATGCACAAGTTGTTGAAGATATTAATGCAGGCACGATTACGGCTCATGTTCAAGATGTTAAGGATGTTATCAATCAATTTTTACCGGCTAGAAAACGAAAACCAAGAGCGAAAAAATCTCCAGTCTCAAAAATCCCACGTACAGATGTTATGGAAACGACGACAATAACCACACAAACGACAACGGAAAATGGTGAAACGGCAATGACAACGACCCCAATCAAAGCggaagcagcagcagcagcattAACTGATAATGTGGGGACAATATCAGAAACAACATCTACTTCAACAGCGACACCGACAGCAGCAAAAACCGGAAGTGCCTCAAaacCAAGATCACGATCACAATCGGAACAACCGGCTACGTGTCCCATTTGTTTTGCAGTTATTCGGCAATCGAGAAATCTAAGACGGCATTTGGAATTAAGGCATTTTGCTAAACCTGGCGTGAAAAAAGAGAGAAAACACGGTGCTATATCCGCACGATGTAATGGTTCACGGAACGAAGAGAGAGAATTGGAACCCTGGGATGCATCGGGTACCGCTATTAATGGCAATATTGATTTAGAACTAGATGGCAATTCAAACGCTTGTGATGCAAATGAAATGTCCAATCAGAATGAAAAACTATATGGAATTCAGCGCGTAAGAGTCGCAACGTGTCATAGTGCCGGTCATGTCTGA
- Protein Sequence
- MALPINSLYSLTWSDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLFDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHSQLPSLLQAAHCLNIQGLAPQTVTKDDYTTQIQLHPMMQQHYTDQDQEQLIATITAPQQHTVHAQVVEDINAGTITAHVQDVKDVINQFLPARKRKPRAKKSPVSKIPRTDVMETTTITTQTTTENGETAMTTTPIKAEAAAAALTDNVGTISETTSTSTATPTAAKTGSASKPRSRSQSEQPATCPICFAVIRQSRNLRRHLELRHFAKPGVKKERKHGAISARCNGSRNEERELEPWDASGTAINGNIDLELDGNSNACDANEMSNQNEKLYGIQRVRVATCHSAGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01088627;
- 90% Identity
- iTF_01088627;
- 80% Identity
- iTF_01088627;