Oorn066355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomyia ornata
Gene Symbol
-
Assembly
GCA_963969285.1
Location
OZ017739.1:369652064-369667608[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0043 1.8 12.3 1.0 1 23 217 239 217 239 0.94
2 20 0.00013 0.055 17.0 1.7 1 23 245 266 245 266 0.97
3 20 0.00013 0.056 17.0 0.4 2 23 273 294 272 294 0.94
4 20 3.5e-05 0.015 18.8 1.4 1 23 300 322 300 322 0.98
5 20 0.00015 0.061 16.9 0.3 2 23 327 348 326 348 0.93
6 20 0.0003 0.13 15.9 7.4 1 23 354 376 354 376 0.99
7 20 5.2e-06 0.0022 21.4 1.3 1 23 382 404 382 404 0.95
8 20 2.7e-05 0.011 19.2 0.2 1 23 410 432 410 432 0.96
9 20 0.0061 2.6 11.8 0.6 3 23 440 460 438 460 0.97
10 20 0.023 9.6 10.0 0.4 2 23 469 490 468 490 0.90
11 20 8e-06 0.0034 20.9 1.4 1 23 496 518 496 518 0.96
12 20 3e-05 0.013 19.1 0.6 2 23 523 544 522 544 0.95
13 20 0.001 0.43 14.2 0.4 1 23 550 572 550 572 0.96
14 20 0.0013 0.56 13.9 0.2 2 23 591 612 590 612 0.95
15 20 1.4e-05 0.0059 20.1 2.2 1 23 618 640 618 640 0.98
16 20 2.6e-05 0.011 19.2 1.0 2 23 647 668 646 668 0.96
17 20 3.8e-06 0.0016 21.9 4.9 1 23 674 696 674 696 0.97
18 20 0.00062 0.26 14.9 0.1 2 23 701 722 700 722 0.95
19 20 4.7e-07 0.0002 24.7 0.9 1 23 728 750 728 750 0.96
20 20 6.7e-07 0.00028 24.2 0.2 2 23 755 776 755 776 0.97

Sequence Information

Coding Sequence
ATGCTTTATGATGTGACGTCTGCTAGGATGAAACGAATGTTTCTTGCCCCGAAGTGTTCTCTGACCGAATTAAAAGCAAGCATACACGAGGATAAAACTAAAGATGAAGCCAAAACCATCAATGAGTCTGAATTAGACAATCGCAAAAATTACCATTGCGGAAGTGACGAAATAGATAGTGAAAGTGGAACCTGTGGTGATCCACATGAGGCTGATGATGAAATGGCTAATTTAAATGCTTGTATCCCAGAATTCAATATcaaaaaagaaacattttcaaaaaataatcaagaagaaatGCTACATCATGCTGCTGACAAAGAAACATTGAATGAAGAAATAGAAGACGCAGAgGATAATACTTTCGGGAAATGTCGCGAAGTTTGCAAAActaaaacaggtcttattctAGGCAAAACGAGCTCATTCAAACCAAAAAATGCATTCGAAGAATCTGAATTAATGTTATTACAATCGGCTGACTCTCAAAGCACCGACACAGCTAAGTCAGACTCCGAAAATTATGAATATGAAAATTGCAGAGTGACGCCTGAAAATACATTTCTTTTAGAATCGCGATTTACATCCATTAATTCATCCTTAAATGAAAAGTATAGCAAAAACGATTTACCTTTGTATTCTAATTTACATAAATGCAATGAATGCGGTCATTTCTTTGCTTCAATACAAGGCTTGAAAATCCATGCAGCCTTGCATAAAAATTCTAACCTCTATAAATGTGAAATATGTGGAAAACGATTCTCTCTGCGATATTTTAAAGCGCATATGACTTTGCATTCGAATGCTAATCTTAGCAAATGTAATGAGTGCGGCAAATCTTTCGCAAATCTAAAGCGGCTTAAGATCCATGAAGCCCTACATAAGAATCCTGACCTCTTCAAATGCGACAAATGCAACAAATCGTTTACTGCAGCACAAAGTTTGAAGGAACACCAATTTGTACATTCTAATTTAAATAAATGTGATGAATGCGGTAAATCATTTGGAAATTTACGAGACTTAAATGTCCATAAAGTCTTGCATAAGAATCCTGAACTATATAAGTGCGATAAATGTGACAAATGCTTTCATAATGAACGCACTTTGAAGGATCATCAACTTAAACATTCGAACTCTCAAATCCATAAATGTGAAGAATGCGGTAAATGTTTTACCACACTAGCAGCACTAAAGATACACGTAGCCTTGCATAAAAATCCTGACCTCTATAAATGTGATTTATGTGGCAGAGCATACAGTCAATTAAAAGGTTTGAGGAGGCATGTAGCTTGGCACTCGAATCCACGTCCCTATGGGTGCGATAAATGTGAGAGATCATATTCTACCATCCAAAGATTGAAGGAACATATGGATTCACATTCGAATGCTGATAAGAAACATATTAAATGTGAAGAATGTggtaaatcatttttgaatttacAAAGATTTAGAACCCATGTAGCCCTGCATAAGAACCCGGACCTTTTTAAGTGTGATGAATGTGGGAAATCCTTCACAGCAGCACATAATTTGAGAGAGCACAAAGTTTCTCATTCTGATTTAAATAAATGTAATGAATGTGGTAAATCATTTATTACGTTACACGGCTTAAAAATCCATGTTGCCTTGCATAAAAATCCTGACCTCTACAAGTGCGACAAGTGCGGAAAATCTTTAAAGGCGGCAAATAGTTTGAGGTTGCATAAAGCTTTACATTCGAAAAAAGAGTTAAAGAAAGATTTAAAgaaagattcgaagagatatttgaaGAAATGTAATGAGTGCGGCAGATATTTTGCTTCCTTAACCGAATTTAATATCCATGTAGCATTGCATACTAATCCTGAACTCTATAAGTGTGAAATATGTGGAAAGAAACTCACTCATCCCCAATATTTAAAGTCACATATGACTTTGCATTCTAATCCGAGTGGAAACAAATGTAATGAATGTGGTAAATCTTTCGCGTATATAAAGCATTTGAAGGTCCATTTAGCCTTGCATAAGAATCCCGATCTGTTTAGGTGCGATGAATGTGGTAAATCTTTCACTACAAGGCATAGTCTAAAACAACACACATTCTCACATTCCAATTTGAATAAATGTGATGATTGCGATAAAATATTTCCATCTTTAAGAGACTTTAATATCCATGTAGCTTTGCATAAAAATCCCGATCTATTTAAGTGCGATAAATGTGACAAATCCTTTTCATCAGCAAGTTATTTGAGGGAACATATCACTGCACATTCTAATCTGAATGAATGTAATGAATGCGGTAAATCGTTTGCTACGTCAAAGAGCTTAAAAGTTCATATCGCTATGCATAAAAATACCTTTGTGTGA
Protein Sequence
MLYDVTSARMKRMFLAPKCSLTELKASIHEDKTKDEAKTINESELDNRKNYHCGSDEIDSESGTCGDPHEADDEMANLNACIPEFNIKKETFSKNNQEEMLHHAADKETLNEEIEDAEDNTFGKCREVCKTKTGLILGKTSSFKPKNAFEESELMLLQSADSQSTDTAKSDSENYEYENCRVTPENTFLLESRFTSINSSLNEKYSKNDLPLYSNLHKCNECGHFFASIQGLKIHAALHKNSNLYKCEICGKRFSLRYFKAHMTLHSNANLSKCNECGKSFANLKRLKIHEALHKNPDLFKCDKCNKSFTAAQSLKEHQFVHSNLNKCDECGKSFGNLRDLNVHKVLHKNPELYKCDKCDKCFHNERTLKDHQLKHSNSQIHKCEECGKCFTTLAALKIHVALHKNPDLYKCDLCGRAYSQLKGLRRHVAWHSNPRPYGCDKCERSYSTIQRLKEHMDSHSNADKKHIKCEECGKSFLNLQRFRTHVALHKNPDLFKCDECGKSFTAAHNLREHKVSHSDLNKCNECGKSFITLHGLKIHVALHKNPDLYKCDKCGKSLKAANSLRLHKALHSKKELKKDLKKDSKRYLKKCNECGRYFASLTEFNIHVALHTNPELYKCEICGKKLTHPQYLKSHMTLHSNPSGNKCNECGKSFAYIKHLKVHLALHKNPDLFRCDECGKSFTTRHSLKQHTFSHSNLNKCDDCDKIFPSLRDFNIHVALHKNPDLFKCDKCDKSFSSASYLREHITAHSNLNECNECGKSFATSKSLKVHIAMHKNTFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01089272;
90% Identity
iTF_01089272;
80% Identity
iTF_01089272;