Oorn066356.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369665725-369667608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0034 1.4 12.6 1.0 1 23 63 85 63 85 0.94 2 20 0.0001 0.042 17.4 1.7 1 23 91 112 91 112 0.97 3 20 0.0001 0.043 17.4 0.4 2 23 119 140 118 140 0.94 4 20 2.7e-05 0.012 19.2 1.4 1 23 146 168 146 168 0.98 5 20 0.00011 0.047 17.2 0.3 2 23 173 194 172 194 0.93 6 20 0.00023 0.098 16.2 7.4 1 23 200 222 200 222 0.99 7 20 4.1e-06 0.0017 21.8 1.3 1 23 228 250 228 250 0.96 8 20 2.1e-05 0.0088 19.5 0.2 1 23 256 278 256 278 0.96 9 20 0.0048 2 12.1 0.6 3 23 286 306 284 306 0.97 10 20 0.018 7.4 10.3 0.4 2 23 315 336 314 336 0.90 11 20 6.2e-06 0.0026 21.2 1.4 1 23 342 364 342 364 0.96 12 20 2.3e-05 0.0098 19.4 0.6 2 23 369 390 368 390 0.95 13 20 0.00079 0.33 14.6 0.4 1 23 396 418 396 418 0.96 14 20 0.001 0.44 14.2 0.2 2 23 437 458 436 458 0.95 15 20 1.1e-05 0.0046 20.4 2.2 1 23 464 486 464 486 0.98 16 20 2e-05 0.0085 19.6 1.0 2 23 493 514 492 514 0.96 17 20 2.9e-06 0.0012 22.2 4.9 1 23 520 542 520 542 0.97 18 20 0.00048 0.2 15.3 0.1 2 23 547 568 546 568 0.95 19 20 3.7e-07 0.00015 25.1 0.9 1 23 574 596 574 596 0.96 20 20 5.2e-07 0.00022 24.6 0.2 2 23 601 622 601 622 0.97
Sequence Information
- Coding Sequence
- ATGTTATTACAATCGGCTGACTCTCAAAGCACCGACACAGCTAAGTCAGACTCCGAAAATTATGAATATGAAAATTGCAGAGTGACGCCTGAAAATACATTTCTTTTAGAATCGCGATTTACATCCATTAATTCATCCTTAAATGAAAAGTATAGCAAAAACGATTTACCTTTGTATTCTAATTTACATAAATGCAATGAATGCGGTCATTTCTTTGCTTCAATACAAGGCTTGAAAATCCATGCAGCCTTGCATAAAAATTCTAACCTCTATAAATGTGAAATATGTGGAAAACGATTCTCTCTGCGATATTTTAAAGCGCATATGACTTTGCATTCGAATGCTAATCTTAGCAAATGTAATGAGTGCGGCAAATCTTTCGCAAATCTAAAGCGGCTTAAGATCCATGAAGCCCTACATAAGAATCCTGACCTCTTCAAATGCGACAAATGCAACAAATCGTTTACTGCAGCACAAAGTTTGAAGGAACACCAATTTGTACATTCTAATTTAAATAAATGTGATGAATGCGGTAAATCATTTGGAAATTTACGAGACTTAAATGTCCATAAAGTCTTGCATAAGAATCCTGAACTATATAAGTGCGATAAATGTGACAAATGCTTTCATAATGAACGCACTTTGAAGGATCATCAACTTAAACATTCGAACTCTCAAATCCATAAATGTGAAGAATGCGGTAAATGTTTTACCACACTAGCAGCACTAAAGATACACGTAGCCTTGCATAAAAATCCTGACCTCTATAAATGTGATTTATGTGGCAGAGCATACAGTCAATTAAAAGGTTTGAGGAGGCATGTAGCTTGGCACTCGAATCCACGTCCCTATGGGTGCGATAAATGTGAGAGATCATATTCTACCATCCAAAGATTGAAGGAACATATGGATTCACATTCGAATGCTGATAAGAAACATATTAAATGTGAAGAATGTggtaaatcatttttgaatttacAAAGATTTAGAACCCATGTAGCCCTGCATAAGAACCCGGACCTTTTTAAGTGTGATGAATGTGGGAAATCCTTCACAGCAGCACATAATTTGAGAGAGCACAAAGTTTCTCATTCTGATTTAAATAAATGTAATGAATGTGGTAAATCATTTATTACGTTACACGGCTTAAAAATCCATGTTGCCTTGCATAAAAATCCTGACCTCTACAAGTGCGACAAGTGCGGAAAATCTTTAAAGGCGGCAAATAGTTTGAGGTTGCATAAAGCTTTACATTCGAAAAAAGAGTTAAAGAAAGATTTAAAgaaagattcgaagagatatttgaaGAAATGTAATGAGTGCGGCAGATATTTTGCTTCCTTAACCGAATTTAATATCCATGTAGCATTGCATACTAATCCTGAACTCTATAAGTGTGAAATATGTGGAAAGAAACTCACTCATCCCCAATATTTAAAGTCACATATGACTTTGCATTCTAATCCGAGTGGAAACAAATGTAATGAATGTGGTAAATCTTTCGCGTATATAAAGCATTTGAAGGTCCATTTAGCCTTGCATAAGAATCCCGATCTGTTTAGGTGCGATGAATGTGGTAAATCTTTCACTACAAGGCATAGTCTAAAACAACACACATTCTCACATTCCAATTTGAATAAATGTGATGATTGCGATAAAATATTTCCATCTTTAAGAGACTTTAATATCCATGTAGCTTTGCATAAAAATCCCGATCTATTTAAGTGCGATAAATGTGACAAATCCTTTTCATCAGCAAGTTATTTGAGGGAACATATCACTGCACATTCTAATCTGAATGAATGTAATGAATGCGGTAAATCGTTTGCTACGTCAAAGAGCTTAAAAGTTCATATCGCTATGCATAAAAATACCTTTGTGTGA
- Protein Sequence
- MLLQSADSQSTDTAKSDSENYEYENCRVTPENTFLLESRFTSINSSLNEKYSKNDLPLYSNLHKCNECGHFFASIQGLKIHAALHKNSNLYKCEICGKRFSLRYFKAHMTLHSNANLSKCNECGKSFANLKRLKIHEALHKNPDLFKCDKCNKSFTAAQSLKEHQFVHSNLNKCDECGKSFGNLRDLNVHKVLHKNPELYKCDKCDKCFHNERTLKDHQLKHSNSQIHKCEECGKCFTTLAALKIHVALHKNPDLYKCDLCGRAYSQLKGLRRHVAWHSNPRPYGCDKCERSYSTIQRLKEHMDSHSNADKKHIKCEECGKSFLNLQRFRTHVALHKNPDLFKCDECGKSFTAAHNLREHKVSHSDLNKCNECGKSFITLHGLKIHVALHKNPDLYKCDKCGKSLKAANSLRLHKALHSKKELKKDLKKDSKRYLKKCNECGRYFASLTEFNIHVALHTNPELYKCEICGKKLTHPQYLKSHMTLHSNPSGNKCNECGKSFAYIKHLKVHLALHKNPDLFRCDECGKSFTTRHSLKQHTFSHSNLNKCDDCDKIFPSLRDFNIHVALHKNPDLFKCDKCDKSFSSASYLREHITAHSNLNECNECGKSFATSKSLKVHIAMHKNTFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01089277;
- 90% Identity
- iTF_01089277;
- 80% Identity
- iTF_01089277;