Oorn042682.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- Rfx2
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:49337522-49350465[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-37 1.3e-32 115.4 0.1 3 78 158 233 156 234 0.97 2 2 2 1.7e+05 -3.6 0.0 43 55 567 581 561 593 0.60
Sequence Information
- Coding Sequence
- ATGTCGCGAGCCAAACTCGTTGCCGTCATCAGCCAGTCATTACGTTCGTTATCCcatcttcatggcgTCTCGTCACAAGATAACCCCAACGGTCATGACACATATCAAGTGCAATATGTAGATCCAGAAATGTATAATGCCAACAACCAAAGTCAAGCACAaatATCCTATCCATTTTGCGCTGTTGGTGATTATCCTCCAAACACTCAACCATATTATGCAGCAACAGGAAACTACACAACAGCTACTAGTTCCTCATCTCATTCATCCAATTTGCCATATATTGTCCCGGTTGATGATAATCTTTTAGTCCCAACATCGCAATCAAGAGACTCACCACAAAGTCTAACAGCGGAAGTAACTTATATACAGGGAAATCACAATGCCCAGCAGACGCCTACTTCTACCACTACTTCAAATAGTGAGGCTGAAAACACTCCTAATTTGTCGCATGCTACTCGGATTTCACCAGCAACAGTTGCCTGGCTACTGGAGAACTATGAAACCGCTGAGGGTGTAAGCCTTCCCCGTTCTACATTGTACAATCACTACATGCGTCATTGTAATGAAAATAAACTGGATGCTGTAAATGCTGCCAGTTTCGGAAAACTAATTCGTTCTGTATTCAATGGGCTACGTACTCGAAGATTGGGAACACGAGGCAACTCAAAATATCACTATTATGGTATTCGCATAAAGCCAGGCTCATCGTTAATGCATGCCATCGAGGAGAAACCTCATGGTTTGTCAAATTCTTCGAGTAACGGGCCCAGTTCTACTAGTAAGAACATGAAGAAAATGGGCTCAAAACCGGAAACATTTGAAGCTTGCTTGCAAtaTCTAGGCGTAGGCACGGCTGCTATCCCAGCTTTCCCAACCATCAACATCGACCAATCCTTGGGGGAAGAAATAACTCTGGACGATATCGATGCCTTTCGATCTATCTATCGAGAACATTGTGAATTGTTCCTAGATGCCATTTTAAATCTCGAATTCAGCAGTGTTGAGGCGTTATGGCGAGACTTTTGGCGTGCAAGTGATAACAATAATTTAGATGATAgtgaagaggaaaaatatttgacGAAGTCGAAACTATATGCTCTTTGTCAAAGCGAGAGTGTTCAATGCTTCATCAAGGAGGTCGACTACAACTTttatcaaaacatggtcgatgtTCTAATTCCTGATGTGTTGCGTCCTATTCCAAGTTCCCTAACACAAGCCATTCGAAATTTCGCAAAGAATCTCGAAAATTGGCTCACCGATGCAATGAGTGGTTGTCCACAGAAGGTGACACAGATCAAGATTGCTGCCGTAGCAGCATTTAGTCAAACACTTCGTCGATATACATCACTCAATCATTTGGCGCAGGCCGCCAGAGCTGTTCTACAAAATAGTTCTCAAATCGCTCAAATGCTCAATGATTTGAATCGTGTCGATTTCAATAATGTTCAGGAACAAGCATCGTGGGTGTGTCAATGTGATACAGCAACCGTACAACGTTTAGAAAACGATTTCAAAACTGCCTTACAACGTCAAAATACGCTGGAACAGTGGGCTGCCTGGTTACGTCTGGTTGTTGATTCTGCCTTGGAAGAGTATCGTGGAAAGCCAAATTATGCAAAAGCCGCGCGACAATTTCTTTTGAAATGGAGTTTTTACAGTTCAATGGTCATAAGAGATTTGACTTTGAGATCTGCAGCTAGTTTTGGTAGCTTTCATTTGATTCGCTTGCTCTATGATGAGTATATGTTCTTCCTGGTAGAACATAAAGTAGCACAAGCTCGTCATACCACACCTATTGCAGTTATGACGGAGGTTGATAAAGTGGTAAGTACTCAGTAA
- Protein Sequence
- MSRAKLVAVISQSLRSLSHLHGVSSQDNPNGHDTYQVQYVDPEMYNANNQSQAQISYPFCAVGDYPPNTQPYYAATGNYTTATSSSSHSSNLPYIVPVDDNLLVPTSQSRDSPQSLTAEVTYIQGNHNAQQTPTSTTTSNSEAENTPNLSHATRISPATVAWLLENYETAEGVSLPRSTLYNHYMRHCNENKLDAVNAASFGKLIRSVFNGLRTRRLGTRGNSKYHYYGIRIKPGSSLMHAIEEKPHGLSNSSSNGPSSTSKNMKKMGSKPETFEACLQYLGVGTAAIPAFPTINIDQSLGEEITLDDIDAFRSIYREHCELFLDAILNLEFSSVEALWRDFWRASDNNNLDDSEEEKYLTKSKLYALCQSESVQCFIKEVDYNFYQNMVDVLIPDVLRPIPSSLTQAIRNFAKNLENWLTDAMSGCPQKVTQIKIAAVAAFSQTLRRYTSLNHLAQAARAVLQNSSQIAQMLNDLNRVDFNNVQEQASWVCQCDTATVQRLENDFKTALQRQNTLEQWAAWLRLVVDSALEEYRGKPNYAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFFLVEHKVAQARHTTPIAVMTEVDKVVSTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043361; iTF_01127052; iTF_01375469;
- 90% Identity
- iTF_01375469;
- 80% Identity
- -