Obru010261.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:176759-205093[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.0031 17.3 1.2 1 23 129 152 129 152 0.91 2 13 0.0079 0.5 10.3 4.6 2 23 276 298 276 298 0.91 3 13 0.00085 0.054 13.4 1.0 3 23 347 368 346 368 0.96 4 13 4.4 2.8e+02 1.7 7.6 3 23 447 468 446 468 0.95 5 13 0.045 2.9 7.9 0.6 1 23 517 540 517 540 0.95 6 13 0.0025 0.16 11.9 0.3 2 23 588 610 587 610 0.96 7 13 0.00042 0.027 14.3 0.1 3 23 634 655 632 655 0.94 8 13 0.0058 0.37 10.7 3.6 2 23 709 731 708 731 0.96 9 13 0.078 5 7.2 4.2 3 23 746 767 744 767 0.92 10 13 6.8e-05 0.0044 16.8 0.1 2 23 814 836 814 836 0.94 11 13 0.33 21 5.2 0.9 1 23 914 936 914 936 0.98 12 13 0.00095 0.06 13.2 1.7 2 23 950 972 949 972 0.96 13 13 0.0051 0.33 10.9 0.8 1 23 1044 1067 1044 1067 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCGAGTGTGACGTCGCACGAGATGACGATGATGCCGGACGCGGCGGAGCTGGACAGCGACGGTTCGAGCTGCAGCGAGCGCGACCCCCGAAAGCGTGTTCGCGGCGACACCGATCCGACCGGGCCCAAGAAGCGTCGGAAACAGACCACACCGGTAAGATTTTCGTCCAGCCTCGCAACCGACGCGCATGAGGACGAGCGCGAGAACGAGCACGAGGACGAGGACAGCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCCGAGCAACGACCATCACCATGACCAATACCTCgatcaccaccaccatcatcaccatcatcaccaccaccaccatcacgaACATTCGCCGTCGTCGAAAGACGAGAACCTGAACAACGAGTTCCGCTGCCAGCACTGCGGCCGGTTCTTCGACAGCAAAGAGACGCTTAACGTCCACGTGGACGGCGAGCACGGCGCCGCGAATCCAGCGGCGCCGGACGTCGCCATTAAGTTAGAGCCGGCGCAGCAGCTGGACCAGACCGAGAGTCCCGTTAGCCTTCTCAGCGTCAAGAACTTCGCCACCTCGAACACGTGGCTGACCTCCGGCGGTCAGCATGCGCAGGCACAGATGCAGTCGCAGATGCAAGCGCAGGGCGAGGATTCGTGGCCTGGCTCGGTTAATCAGATCGCCACGATGACAAATCACTTGCAGGCACTCTCGGCTTTCCCAGGCGCTCTCGCGCCGTACCTATCCTTACCAGGTTTCCCCTTGGCAGATCCCCAACAGGTGCCAAGATCATCTTTAGGAGCGGCGCCGATAAGGATCTTCAATCCGGACGCGTATTGCGATCTGTGCAACAAGGAATTCTGCAACAAGTACTTCCTGAAAACGCACAAGGCCAACAAGCACGGGATTTACGTGGACTCGCCGGCGACGTCATTAAGCACCATGGACGCGAATGTGTCCGGCATCGTGTTCGGTACGAACTTTCATAGCAATGCCACCACGGTGAAGCTGGAACCACCGGCGACGCCGCCGACGACCGGTGTCGCCTGTGATATTTGTCAGAAGCGTTTTCGTAACGAAGAGTCCGCGAAGAAGCACAAACAAAAGGTACACAACGAGTCGATGGACCACTCGGACCAGCAGAACGAGGAAGATCGGGAGACTCCGCGCGACAGTCCCGGCGGCATGGAAACGCTCTTCAAGCAAGAATACGGCATCGAACAAGAAGACACTAGTTTTATGCCAGCACCCAGACACCTGTCGCCTCAATCTATTCAACAAGCGCGTGATTCCGGCTTCAATGCCGATCGCCTGCGCCGTCTAGGCGTGATAAACCCCGAAGCGTTCTGCGAGATTTGCTGCAAAGAGTATTGCAACAAGTATTTCTTGCGCACGCACAAAATGAAGAGGCACGGCATCGTCCTACAGGATAACGAGAGGTCGCCCAGCAATCCCGGCGCGTCCGTCATTTGGCATCAGGTGCAAACCAGTCCACTAAACTTGATCGTCACCGAGAACACCGCGAGTTCGGAGTCAAACGATCGCACTGGCGAGGATCATGAATGCAAACCTTGCGGTATTCGCTTCCAAACAGCAGGTCTGTATCAGGCAcatagcaagaaaatacacGAGGGTGAAGAACGAGGCTCACCAAAGCAGGAGTACGACCCAAATAGCTCTGATCCACGCACCGACTCCATCTCCGAGGATCTGCAGAAGCTGCAGACGATGATACTGCAGTTGAACGGCCTGAATTCCGGTAAAGGAACGTCCTGTGCCGTTTGTGCCAAGGAGTGCGACTCAAGGTCGGCCTTGCGTGTCCACATGGCGACGGAGCACGGCGCCACGAGCGATGAGATCTCATCGTCGCCGCAAGAGAAGTCGCCCGTGGCTATTTCCGCCATTTTCTGCACATTGTGCGAGAAGGATTATCCTAGCCAAGAAGCACTGAGAAGACACATCAACGAGGAGCATCAGCCTGTCATGTCGAGTGTCGTTACTTTGCCGACACTTCCGACGGTAGCCACTTCTACTACTAATTCGACGCCAACTAGTCAAACTCCTACCGGCCAGACGACGAcaccgacgacgacaacggaaAGAAAAGTGACGTCATTGACTCCCACATCGAGCTACTGCGAGATCTGCAACAAAGAGCTCTGCAACAAGTACTTCATGAAGACGCACATGCAACGGATGCACGGTATCGAGATCGAGAACGGCGCACAAATAGGTGGCGTGATTTGCAACATCTGTAACAAGGAGCTGTGCAGCAAGTACTTCCTGCGCGTGCACAAACACAACACCCACGGTATCGTCGACGAGAACACCTCGGGATCGACTAACAACAGGCAGGAGTCTTACGATGCCTCGAGCACAGACGACTCGGCACTGAAGCCGGAACAGTTAGGAGACCTCAGTAACAGATACTTCACTCACTTCACCGAGGTCTGTCCGATCTGCAATCGAAGGTTTCGCAGCGTCAAGTGGTTGAAAGCCCATCTAATGGGTGACCACGGTAAGGCGGGAATCGATAAATGGCGCGAATTAGAACAACAATATCAAGCAACGTCCAGAACGGGCAGCAGAAGTGTCGCTTCAGCGAAGAATACCCAGCAGTCCTCGAATCTGAAGATACCCAACGGCTTCGAGATCGCGCAACAGATCAAATCCGTAGATTATACGAACCTGGGAAATCAGGTGCTTTCCAACCTCTTCGGCTCGTCCTCGGAAGAGCAGCTGAAGAACTACCGTTGCTCCTTCTGCAACTTCACGACGCCCGTGCtacctttcctctttcttcacGAACGATCCCACGTGAATGCCCAGGAAAATCTCGAGAGCGATCGATCACTGCAGTGCCCGATTTGCTCGCAAGACTTCCATCAACCGGAGTTGCTTCATCAGCACTTACTCACTAAGCATCAATTCCCCACGCTGCTTTCGCAATTCCAGCAGCCGATTCCAAATAGACCGGACATCGAGAAGTTGAATGACACCAAGGACAGAGGCGACCCGGATGCAAAAGACGACCGAGCGGGTTGCAGTCCTCAGACTGCAGATCAGAGCGTCTCCGAAGTCGCGGCGAGGACCCAACGTCAAGACGAGACTGCGGTGCAGGTGACGCCTCAAGGCGCGTATAAATGCGCACAATGCGGATACGCGACGACGAATCTGAATCGGATTAAAAAACACGTACGAAAGGATCACAAGGCGATCGGCGATCCGACCGAGAGCGTGATCGCTGAACTTAGCAAGACCCTGAAGGAGGTGGCGAACAAACAGAAGGTGCCGGTCTGCTACGCGATGCCGCAGGACATGAATTCGAACCCCGACAAGACCATCATGCAACCGTTCCTGCTGGAGGAACAGGATTTGTTGCAAGCAGGCGCCGAGTCGAGTTCAGCGAAAAGATTCGCACCGGCTCTGGTCTACCTGCCAGTCAAGTCCAGAATCAGCAACGCCCTGACCGCTTCCTTCACCCTCACCCCCGCCTGA
- Protein Sequence
- MSSSVTSHEMTMMPDAAELDSDGSSCSERDPRKRVRGDTDPTGPKKRRKQTTPVRFSSSLATDAHEDERENEHEDEDSEGKPSSRSPLPSNDHHHDQYLDHHHHHHHHHHHHHHEHSPSSKDENLNNEFRCQHCGRFFDSKETLNVHVDGEHGAANPAAPDVAIKLEPAQQLDQTESPVSLLSVKNFATSNTWLTSGGQHAQAQMQSQMQAQGEDSWPGSVNQIATMTNHLQALSAFPGALAPYLSLPGFPLADPQQVPRSSLGAAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPATSLSTMDANVSGIVFGTNFHSNATTVKLEPPATPPTTGVACDICQKRFRNEESAKKHKQKVHNESMDHSDQQNEEDRETPRDSPGGMETLFKQEYGIEQEDTSFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVLQDNERSPSNPGASVIWHQVQTSPLNLIVTENTASSESNDRTGEDHECKPCGIRFQTAGLYQAHSKKIHEGEERGSPKQEYDPNSSDPRTDSISEDLQKLQTMILQLNGLNSGKGTSCAVCAKECDSRSALRVHMATEHGATSDEISSSPQEKSPVAISAIFCTLCEKDYPSQEALRRHINEEHQPVMSSVVTLPTLPTVATSTTNSTPTSQTPTGQTTTPTTTTERKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSGSTNNRQESYDASSTDDSALKPEQLGDLSNRYFTHFTEVCPICNRRFRSVKWLKAHLMGDHGKAGIDKWRELEQQYQATSRTGSRSVASAKNTQQSSNLKIPNGFEIAQQIKSVDYTNLGNQVLSNLFGSSSEEQLKNYRCSFCNFTTPVLPFLFLHERSHVNAQENLESDRSLQCPICSQDFHQPELLHQHLLTKHQFPTLLSQFQQPIPNRPDIEKLNDTKDRGDPDAKDDRAGCSPQTADQSVSEVAARTQRQDETAVQVTPQGAYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSKTLKEVANKQKVPVCYAMPQDMNSNPDKTIMQPFLLEEQDLLQAGAESSSAKRFAPALVYLPVKSRISNALTASFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452795;
- 90% Identity
- -
- 80% Identity
- -