Dqua000447.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- -
- Assembly
- GCA_001313825.1
- Location
- NW:3198792-3202202[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.6e-05 0.0027 17.3 1.2 1 23 115 138 115 138 0.91 2 13 0.0075 0.44 10.3 4.6 2 23 256 278 256 278 0.91 3 13 0.0015 0.089 12.5 1.0 3 23 325 346 324 346 0.96 4 13 4.2 2.5e+02 1.7 7.6 3 23 430 451 429 451 0.95 5 13 5.5 3.2e+02 1.3 4.2 1 23 497 520 497 520 0.92 6 13 0.0002 0.012 15.3 0.3 2 23 568 589 567 589 0.95 7 13 0.0004 0.024 14.3 0.1 3 23 613 634 611 634 0.94 8 13 0.0055 0.32 10.8 3.6 2 23 684 706 683 706 0.96 9 13 0.074 4.4 7.2 4.2 3 23 721 742 719 742 0.92 10 13 0.00017 0.01 15.5 0.1 2 23 786 808 786 808 0.94 11 13 0.32 19 5.2 0.9 1 23 886 908 886 908 0.98 12 13 0.0009 0.053 13.2 1.7 2 23 922 944 921 944 0.96 13 13 0.0049 0.29 10.9 0.8 1 23 1018 1041 1018 1041 0.98
Sequence Information
- Coding Sequence
- atgtCGTCGACATCGCACGAGGCGGCGGCGATGCCGGCGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAGCGCGACCCCCGGAAGCGCGTTCGCGGCGACACCGACCCGACCGGGCCCAAGAAGCGCCGGAAGCAGACCACGCCGGTAAGATTCTCGTCCGGCGCGCACGAGAACGAGCGCGAGGACGAGCAGGAGGACGAGGACAGCGAAGGTAAgccgtcgtcgcgatcgccggGCAATCACCACGACCAATACCACGATTACcatcaccatcaccaccaccatcaccatcaccaccaccacccgCCGTCGTCGAAAGACGAGAACCTGAACAACGAGTTCCGCTGCCAGCACTGCGGCCGGTTCTTCGACAGCAAAGAGACGCTTAACGTCCACGTGGACGGCGAGCACGGCGCCGCGAACCAGGCGGCGCCGGGCGTCGCCATCAAGTTAGAGCCGGCGCAGCAGCCGGACCAGACCGAGGGTCCCGTTAGTCTCCTCAGCGTCAAGAATTTCGCCACTTCGGCCGCGTGGCTGACCTCCGGCGGTCAACATGTGCAGTCGCAGATGCAGGCCGAGGATTCGTGGCCCGGCTCGGTTAACCAGGTCGCCACAATGACCAATCACCTACAGGCACTCTCGGGTTTCCCAGGCGCTCTCGCGCAGTACCTACCCTTGCCAGGTTTCCCCTTGGCGGACCCTCAGCAGGTCCCGAGGTCTTCCTTGGGACCGGCGCCGATCAGGATCTTCAATCCGGACGCGTATTGCGACCTGTGCAACAAGGAATTCTGCAACAAGTACTTCCTGAAGACGCACAAGGCGAACAAGCACGGGATCTACGTGGATTCGCCGGCGACCTCGTCGACCGCCATGGACGTGTCCGGCGTCGTGTTCGGCGCGAATTTCCACGGTAACGCCGCGACGGTGAAGCTGGAGCCGCCGGCGACGCCGCCGACGAGCGGCGTCGCCTGTGACGTCTGCCAGAAGCGTTTCCGCAACGAAGAGTCCGCGAGGAAGCACAAGCAGAAGGTGCACAACGAGGCGGCCGATCAGTTGGACCAGCAGACGCCCCTATCGCAAAACGAGGAAGATCGGGAGACTCCGCGGGACAGTCCCGGTGGCATGGAGGCGCTCTTCAAGCAAGAATACGGCGTCGAGCAGGAGGACACCAGCTTCATGCCGGCGCCCAGACACCTGTCGCCCCAGTCTATCCAACAGGCGCGCGATTCCGGCTTCAACGCCGACCGCCTGCGCCGCCTGGGCGTCATCAATCCCGAAGCGTTCTGTGAGATCTGCTGCAAGGAATATTGCAACAAGTACTTCTTGCGCACGCACAAAATGAAGAGGCACGGCGTCGCCGTGCAGGAGAACGAGAAGTCGCCCGGCGCGACCGCCACTTGGCATCAGGTGCAGACCAGCCCGTTGAATCTGATCGTCACCGAGAGCACCGCGAGCTCGGAGTCGAACGACCGCACCGGCGAGGATCACGAGTGTAAACCCTGCGGTATCCACTTCCAGACGGCGGGTCTGTACCAGGAGCATTGCAGGAAGATGCACGACGGCGAAGAACGAGGTTCGCCGAAGCAAGAATACGAACCGGACAACTCGGACCCGCGCACCGACTCCATCTCCGAGGACCTGCAGAAGTTGCAGACGATGATACTGCAGCTGAACGGCCTGGATTCCGGCAAAGGAACCTCCTGCGCCGTCTGCGGCAAGGAGTGCGACTCAAGGTCGGCCTTGCGTGTCCACATGGCGGAGCACGGCGCCACGAGCGAGGAGATCTCATCGTCGCCGCGGGAGAAATCGCCCGTGGCTGTTGCTACCATTTTCTGCACGCTCTGCGAGAAGGATTACCCCAGCCAAGAGGCGCTGAGAAGACACATCAACGAGGAGCATCAACCCGTCAGCTTGCCAGTGCTTCCGACGACGGCGGTCGTCTCTACCAGCGGCTCGACGCCAACTAGTCAGACTCCCGCCGGCCAGACGACCGCGCCGGCTGCAACAACCGAGAGAAAAGTGCCGTCGTTGACGCCCACGTCGAGCTACTGCGAGATTTGCAACAAGGAGCTCTGCAACAAGTACTTCATGAAGACGCACATGCAACGGATGCACGGCATCGAGATCGAGAACGGCGCGCAGATAGGCGGCGTGATCTGCAACATCTGCAACAAGGAGCTGTGCAGCAAGTACTTCCTGCGCGTGCACAAGCACAACACCCACGGTATCGTCGACGAGAACACCTCGACTAACAGACAGGAGTCTTACGACGCCTCGGGCGCGGACGACTCCGCGCTGAAGCCGGAACAGCTGGGGGACCTCAGCAACCGGTACTTCACCCACTTCACCGAGGTCTGTCCGATCTGCAGCCGGAGGTTTCGCAGCGTCAAGTGGCTGAAGGCCCATCTAATGGGCGACCACGGCAAAGCGGGAATCGACAAATGGCGCGAACTGGAACAACAGTATCAAACGACGTCCAGGACGAGCGGCAGGAGCGTCGCTTCGACGAAGAATACCCAGCAACCCTCGAATCTGAAGATCCCCAACGGCTTCGAGATCGCGCAACAGATTAAGCCCGCGGATTTTGCGCACCTGGGCAATCAGGTGCTCTCCAATCTCTTCGGCGCGTCCTCCGAGGAGCAGCTGAAGAATTATCGTTGTTCCTTCTGCAACTTCACGACGCCCGTGCTgcctttcctctttcttcacGAGCGGTCCCACGTGAATCCCCAGGAGAATTTCGAGGGCGATCGATCGCTGCAGTGCCCGATCTGTTCGCAGGACTTCCATCAGCCGGAGCTGCTCCATCAGCACTTGCTCACGAAGCATCAGTTCCCCACGCTACTCTCGCAGTTCCAGCAGCCGGTTCTGAACAATTTCCGACCGGACATCGAGAAATCGAACGACGCCAAGGACAGAGGTGAGCCGGACGTGAAAGACGACCGAGCCGGATGCAGTCCTCAGACTGCGGATCAGAGCGTCTCCGAAGCTGCGGCGAGAAACCAACGTCAGGACGAGACCGCGGTGCAGGTGACGCCCCAGGGCGCCTACAAGTGCGCGCAATGCGGCTACGCGACGACGAATCTGAATCGGATCAAGAAGCATGTACGGAAGGATCACAAGGCGATCGGCGACCCGACCGAGAGTGTGATCGCCGAACTCAGCAAGACCCTGAAGGAAGTGGCGAACAAGCAGAAGGTGCCGGCCTGCTATGCGATGCCGCAAGACATGAACTCGAATCCCGACAAGACCATCATGCAACCGTTCCTGATCGAGGAGCAGGACTTGATGCAGGCGGGCGCCGAGTCCAGCTCGACGCAGAGATTCGCACCGGCTCTGGTCTACCTGCCGGTCAAGTCCAGAATTAGCAACGCTCTGACCGCTTCCTTCACCCTCACCCCCGCCTGA
- Protein Sequence
- MSSTSHEAAAMPAELDSDGSSCGERDPRKRVRGDTDPTGPKKRRKQTTPVRFSSGAHENEREDEQEDEDSEGKPSSRSPGNHHDQYHDYHHHHHHHHHHHHHPPSSKDENLNNEFRCQHCGRFFDSKETLNVHVDGEHGAANQAAPGVAIKLEPAQQPDQTEGPVSLLSVKNFATSAAWLTSGGQHVQSQMQAEDSWPGSVNQVATMTNHLQALSGFPGALAQYLPLPGFPLADPQQVPRSSLGPAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPATSSTAMDVSGVVFGANFHGNAATVKLEPPATPPTSGVACDVCQKRFRNEESARKHKQKVHNEAADQLDQQTPLSQNEEDRETPRDSPGGMEALFKQEYGVEQEDTSFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGVAVQENEKSPGATATWHQVQTSPLNLIVTESTASSESNDRTGEDHECKPCGIHFQTAGLYQEHCRKMHDGEERGSPKQEYEPDNSDPRTDSISEDLQKLQTMILQLNGLDSGKGTSCAVCGKECDSRSALRVHMAEHGATSEEISSSPREKSPVAVATIFCTLCEKDYPSQEALRRHINEEHQPVSLPVLPTTAVVSTSGSTPTSQTPAGQTTAPAATTERKVPSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSTNRQESYDASGADDSALKPEQLGDLSNRYFTHFTEVCPICSRRFRSVKWLKAHLMGDHGKAGIDKWRELEQQYQTTSRTSGRSVASTKNTQQPSNLKIPNGFEIAQQIKPADFAHLGNQVLSNLFGASSEEQLKNYRCSFCNFTTPVLPFLFLHERSHVNPQENFEGDRSLQCPICSQDFHQPELLHQHLLTKHQFPTLLSQFQQPVLNNFRPDIEKSNDAKDRGEPDVKDDRAGCSPQTADQSVSEAAARNQRQDETAVQVTPQGAYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSKTLKEVANKQKVPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQAGAESSSTQRFAPALVYLPVKSRISNALTASFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087438; iTF_00769914;
- 90% Identity
- -
- 80% Identity
- -