Obru010186.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- ZFX
- Assembly
- GCA_010583005.1
- Location
- NW:1687541-1699975[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 86 3.3 0.1 3 23 16 36 15 36 0.94 2 15 9.4 6e+02 0.6 4.2 1 23 947 970 947 970 0.80 3 15 0.0019 0.12 12.2 2.0 2 23 1054 1076 1053 1076 0.96 4 15 0.0044 0.28 11.1 0.2 2 23 1089 1110 1089 1110 0.98 5 15 1.2e-05 0.00079 19.1 3.1 2 23 1113 1134 1112 1134 0.97 6 15 0.01 0.65 10.0 0.3 1 23 1140 1162 1140 1162 0.95 7 15 2.9e-05 0.0019 18.0 4.4 2 23 1169 1190 1168 1191 0.95 8 15 0.09 5.7 7.0 3.7 5 23 1204 1222 1203 1222 0.97 9 15 1.8e-05 0.0012 18.6 1.5 3 23 1229 1250 1228 1250 0.97 10 15 0.0083 0.53 10.2 0.3 2 23 1266 1286 1265 1286 0.97 11 15 5.5e-05 0.0035 17.1 0.7 1 20 1292 1311 1292 1314 0.92 12 15 6.8e-05 0.0044 16.8 2.7 1 23 1322 1344 1322 1344 0.99 13 15 0.0019 0.12 12.2 3.2 1 23 1350 1372 1350 1372 0.97 14 15 3.5e-06 0.00022 20.9 3.9 1 23 1378 1400 1378 1400 0.99 15 15 0.0015 0.095 12.6 6.5 1 23 1406 1428 1406 1429 0.96
Sequence Information
- Coding Sequence
- ATGGATCTGAACGGCGCGGTGGCGCCCGTTCTCGGGGCCGTGGCTTGTCCCGTGTGCACCCTGTATCTACGCGAAGGCATCAGCCTGCAGAAGCACCTGGACACCCATCCCAAGGAACAAGTGATAGATGCTCTTATTAAGGCTAGTTCCTCCTCGTTGCAATCACAGCAACATCAACAATCACATCAACAACAGACTCCATCGACAGTGCCAGCACCGCCATTAGTACCACTGACACAGACTACTCCTCAGACCTCTGCTCCCATACAGACACCTCAGGCATCGTCCCAGGTATCACCAAATGCACATATCCCTGCTCACTCTCCGTATCCCATAGGACCTATCTTCGAGTGCCCACCTATAAGCACAATGATGCCACCGCAGTTCACCTCGTTCAGCTATCAGCAATTTGTGAACAACGGGACCATGATGATACCGCAGGCGTACGCGATGGCGCCCCAGACTAACCAGATGATGCAAATGCTGTACAGTCCGTACAGTATGTACCAGCAGCAACAGATACCCACCGTCCAGATGATCTCACCGGTCACGACTATACCTGGCGCGACGAGAATGCGACCAGTGGCCAACATGAGCGCGGAGAACAACGTGAGGACGACCTTGACAGTTCCTATGAACAGTCCCGAGCCGAAGCAGATTCTGCCTGAAATCCTATCCGAGCACGAGGCTGGACAAGTGTTGCCGGCCGGGAACCCACCGGCGTCGCCTCTACTGCAAAGTGAGGACGTGGTGGCTGTAGAACGCGAGCAAGTCGATGACGACGCGCTGCACGTGGAACAGCATAGAGTGGTGCAGCAGACGCAAAGTTCCACGGTCGCCGGTGAGGACGCCGCGCAGCACGAGTACAATAGCATTCCTAGATCCATCGCGATCACTTGCTCAATGAGCAATAGCGCCGCGGACGATAAGGTAGAGATGGTATTACCGGATATGCaggaggacgacgaggaggagccGATAATTGACGTGGCCGTGGAGCTGCCGTGCGAACCCGCGGCGTATGAGCAATCAGAGACGCAACAGTTCGCGCGGCAGGTCACGGTGGAGGAGTACGTGAGTGACGACAAGGAAAACGACGCGTCGCCGGACGACGCGGTCGATCCTATGGCTTGCGAGCGTGACGTGGAGGAAGCTGCGGGCGACGGGGGAGTCGTGAGCTGCAACgctcccgacgacgacgacgttgcgtCGCCGCGGAAGACGCCAGTGAACGAAACGAAGGAGCCTGTTCGTCAACCCGAGGTGGAGCAGTTGGAAAATCTTTTGATCACCATAATGGAAACTGAGTTGAATGACGCTTCGCGGAGAGAAGACGACCAAAAGaatgaggaagaagagagaatgaACGAAAAGGAGGAACCTACGTTGGACCGAGTGGAAAGTGTGATTCACGACACGGTGATGACGACTCTCGGTTGTCATGAAAACGATCATATATTGCCTGACATGCAGGAGAACGACACCCCCGAGTGCCCGAACGAGTACGTGGATCATGAACTGGAAAGAACTTACTGGTACCGGCACAGGCATGTCAGATCAGCGCCTCCGTCTCCCTTCATGAGGAAGGAGTCCGCTTTTAGGGAAGACACCATCAGCTCCTCGCGTTACGGATCCTACTTCGAACGTCGGCGAGTCGGCTCGTGCGACAATCTCACTCTGTATTTCCGAGAGCACGataacaacgacgacaacgacgaagacGTGGATGTGGACGACAAAGTCGACGACGAGGAGAACTTGGACGAGGCGGACATGGAGATCGAGGCGATTCCCAGTCCGCACACGCCTTTCGCGCGATACGGCAATAACACGGAATGCGTGAGATCGCACACGCCGTTGTCTGCGATCAGTGGTATATCTGTGTTAAGGGTTAGGACGGATCTCAGCAAGCCCTGTTCACCCGTATCCGTGCAGTCCTTCTGTCACGTGGACAGTGATAGCTTGAGCCATGACGAGGACAGTAACAGCGGGGTAGGTCATAATATCGTAGAGAAAGATCCAATTGACTGTTCTCAGGTCGAGGAGAAAATTAAGACTGATCATCATCAGCAGCAAGCGATGGACACGGTGTGTGAGAATGCCGAGAAGCTCCAGGAGTCGAGTTACGTATACCATCATCAATCGGTGATAACCGAGCACGTCAGTTCGTTCTCTGTGAATcattcgccgccgccgccgcagcagcaacagcagcagcaacagcccGTTTTAACGCACCACGAGTCGTATTCTATGACCAGCTCCAAGACACACAGCCTGTTAAATCTGTCCGAGTCGATTCATCCCACAACCAGCGCCGAGTCCAAGAGCTTTCACTCCACCACCAAGTCATTGATGCCGAAGCAACCGATGGAACTGCTTAACATAAACGAGGATGCTCACGCCGGGCCGATGAATGTTTTCGAATTCGAAGGACTACAGATAATAGTTCCTAGTACATTTATAAGTGATTCGTCCCAGAAAGCGGTGAGTGCGACCAGCCAGCAGTCCATGGCGAGTAGTGAGGGTGCGATAGGTATCGATGAGGAAGTCAAGAGTATTAACATGCGAGCTGACGAGACCATGCCGCCCAGAGGCGAATTATCGGAACAAGAGAGCAACGGGTGTACAGAACAGTCCGCATGGCAGTTGTACATGGGTCAAGAATCTTCGCGTATGTCTACTTCCTACGATCTGCTGGCACGAGAAAGCTGGGAAGAATCTGAAGGATCCGATAATGAGATCAGCGGACCGCTGTTGGATAGCAGATCGTTGGCCACGCACTTCACGTCAAGCCTGTTTCTGGACCGGGACCGGAAGACACCGACAAAACGGACGTTCAAGTGTTATCATTGTAGCGAAGTATTCGATTGTCCCAAGGAGCGCAGAGTTCACAGCACCACGGTGCACAAGGGAGCGGTGCCCAGCAGCAGTAGGGATCAGTTGGATCCGCCGGAGGTGAAGGACATCAAGTTGCTCGACAATCGAATGAACGTGTTCGACGACATATTCGTGCCGGGTCTGCACGTGCAGCAGATGTACCATCAGCAGCAACCACTTCTGCATCAGCTTCAGCCGCCGCAGCCGTCGGACCTGACCAAGGCGGAAGGCGGTGATCAGAAGATCGACAATCTGGCGATACCGTCGACCATCGAGGTGACGTGCGCGATATGCAGTCAGCGATTCAACAGCGAGAAGTCCTTGCAAGTGCACCACAAGCGCATGCACATCGCCGAGGTGAACAAGCGGATTCGCGAGAACGCTAAGTGCCAGATATGCAGCGAGGAGTTCCCGACGGTGTTCCTATTCAACGCCCACCTGAAGATTCACCCGCTGGAGTGCAGTCAGTGCGGCAAGTACTTCTACAGAAAGCAAAATTTCAAACTCCACATGAAGCGTCACCTCGGCATCAAGCCGTTCCCCTGCACCGTGTGCGACAAAGCGTTCCTGACCAAGCAGAAGCTGGACGAGCACACCAACGGCCACACCGGCAACGCCCCGGTCAAGTGTAGTCTGTGCAACGAGACTTTCCGTAGATATTCGAATTTAACGCAACACAAGAATCGGCATCATCTCAACATCAAGAAGAAGCTCAAGGACTACATATGCCATTGCGGCGAGGTGTTCCACACGAAGAAGAAGCTGGCTTGGCACAAAGAGACGCACGACGAGAAGCCGAAGGCGTGCACGTACTGCAACGAGAGATTCATTCACATGGCCAGCCTCACGCGTCACATGCGCCGCGCCCACAATCGCCGATTCGTGCCCGATGCCCATCGCGAGAGCGAGAACGTCGAGTGTCCGATATGTAAGTGTATCTACCTGCGCTCGTCGCTGGCGGTGCATATGCGCGTGCACAACGGCGAGCGGCCGTACGAGTGTCAGGTATGCTCCAAGGCGTTCAGCACTAAGTGGAACCTGCAGTTGCACAAGTGGACCCACGCGGCGCGCAGCACCAAACCGTTCAAGTGTAATCAGTGTAGCGCCGCGTTCTACCGTCACAGCGACTACACGGCGCACATGAATTCCCACCGCAACGTGCGGCCGTACACGTGCAACTATTGCGGCGCCCAGTTCATACGCAAATACAACTGCCTGCGGCACGTGAAGGAGCACGAGGAGAACAAGGCGTACACGTGCGACGTATGCAACAAGACCTTCCACCGCTCGTACTATCTTAAGGAGCACCTGCGCGTGCACTCGGGTGCGCGGCCGTACACGTGTCACATCTGCGGCAAGACCAGCGGCACCAAGTCCAATCATAACAAGCACGTTAGAATTCACCACGCGCGCGAGCCTGTAAATACCGAAAACTAA
- Protein Sequence
- MDLNGAVAPVLGAVACPVCTLYLREGISLQKHLDTHPKEQVIDALIKASSSSLQSQQHQQSHQQQTPSTVPAPPLVPLTQTTPQTSAPIQTPQASSQVSPNAHIPAHSPYPIGPIFECPPISTMMPPQFTSFSYQQFVNNGTMMIPQAYAMAPQTNQMMQMLYSPYSMYQQQQIPTVQMISPVTTIPGATRMRPVANMSAENNVRTTLTVPMNSPEPKQILPEILSEHEAGQVLPAGNPPASPLLQSEDVVAVEREQVDDDALHVEQHRVVQQTQSSTVAGEDAAQHEYNSIPRSIAITCSMSNSAADDKVEMVLPDMQEDDEEEPIIDVAVELPCEPAAYEQSETQQFARQVTVEEYVSDDKENDASPDDAVDPMACERDVEEAAGDGGVVSCNAPDDDDVASPRKTPVNETKEPVRQPEVEQLENLLITIMETELNDASRREDDQKNEEEERMNEKEEPTLDRVESVIHDTVMTTLGCHENDHILPDMQENDTPECPNEYVDHELERTYWYRHRHVRSAPPSPFMRKESAFREDTISSSRYGSYFERRRVGSCDNLTLYFREHDNNDDNDEDVDVDDKVDDEENLDEADMEIEAIPSPHTPFARYGNNTECVRSHTPLSAISGISVLRVRTDLSKPCSPVSVQSFCHVDSDSLSHDEDSNSGVGHNIVEKDPIDCSQVEEKIKTDHHQQQAMDTVCENAEKLQESSYVYHHQSVITEHVSSFSVNHSPPPPQQQQQQQQPVLTHHESYSMTSSKTHSLLNLSESIHPTTSAESKSFHSTTKSLMPKQPMELLNINEDAHAGPMNVFEFEGLQIIVPSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCYHCSEVFDCPKERRVHSTTVHKGAVPSSSRDQLDPPEVKDIKLLDNRMNVFDDIFVPGLHVQQMYHQQQPLLHQLQPPQPSDLTKAEGGDQKIDNLAIPSTIEVTCAICSQRFNSEKSLQVHHKRMHIAEVNKRIRENAKCQICSEEFPTVFLFNAHLKIHPLECSQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAHRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKTSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452743; iTF_00769863;
- 90% Identity
- -
- 80% Identity
- -