Obru005109.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomachus brunneus
Gene Symbol
-
Assembly
GCA_010583005.1
Location
NW:2360812-2370155[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.7e-05 0.0024 17.6 2.5 1 23 269 291 269 291 0.99
2 12 0.12 7.7 6.6 3.3 1 23 296 318 296 318 0.93
3 12 0.00065 0.042 13.7 1.2 3 23 329 349 328 349 0.97
4 12 6.3e-05 0.004 16.9 7.3 1 23 441 463 441 463 0.96
5 12 0.00083 0.053 13.4 1.0 1 22 468 489 468 492 0.90
6 12 2.5e-06 0.00016 21.3 1.1 1 23 531 554 531 554 0.94
7 12 3.7e-06 0.00024 20.8 2.5 1 23 593 615 593 615 0.99
8 12 0.00013 0.0086 15.9 4.0 1 23 629 651 629 651 0.96
9 12 0.00013 0.0081 16.0 4.7 1 23 657 679 657 679 0.98
10 12 0.0011 0.072 13.0 3.2 1 23 685 707 685 707 0.98
11 12 3.8e-05 0.0024 17.6 6.5 1 23 713 735 713 735 0.98
12 12 0.00018 0.011 15.5 0.3 1 21 741 761 741 762 0.93

Sequence Information

Coding Sequence
ATGGAAGTCAACAGTAAGATGCTGACGCGGGCGAGTCAGCAGAACACCAGTCTCTGCCGTGTCTGTTTGATTGCGGATCACAACAATCGATGCATCTTCCGCGAGAACTGGGACGACCCGGATAGCACGAGCGCCTCCGAATTGTCGACGAAGCTGCGACTGTGCGGCGGCGTGGAGGTGCTGGAGGACGACGGCTTGCCCACCAGCATCTGCCTTGAGTGTGTGACGAAAGTCAACGTCGCCTACGAATTGAGGGAGCAGTGTCAGAAGGCTGACATGAAGCTCAGGAAGCTCTACGGCAAAGCCTCAAGGAAGAGCATTGCTGGTAACTGCATTTCTACAAAGGACCAGTATTGTCAGACTGAACAGTTTTATATCTCTGATACGATCAAATCGGAAGACAATACAGAACTGAGTGTGGACAATGTAATTAATATAGAGAAGAGTATCTTCACAGAATCAAAGACTGTCATGAGACATGAACAAATCATAGATGCTTTTAATGAAGGCTATTGCGCTGAGGACATATTAGTGGACAATGAGCCAGGTCTAGACTGTGTTAACAAGTTTAAAGAAATAGGGCACGAAAAAGTGGCCAAGAAAGAAACTTACAGAACGAGACGGATGACCATGTTCAAGAGGGTCACATCTATGGAGAATCTGAAAAATcacaaagagagacagagaagataTATTAAGAAGAGTGCAATGAATGTCAAGCGCGATAGTGGCGATCACGAGCATCAGACGAAGATGAGGAGAAATCTCCACAATAGAGTGGACAGAACATCCGAGTTTGATTCATATAAATGTTTGGAATGTGATAGATTTTATTCCAGTAAGAAGTCCCTAGATAGACACACGTTAACTCACAACGACAAAAAGTTCAAATGCGAAAACTGTGATAAGCAATTCTTCTGTCTGGACAAACTGCTCAAGCATGTGGATCTGCACAAAATGAAGGAGAAGCCGCAGCCGGTGCTGTGTCGAATCTGCAACAAGAGCTTTAGAAAGACCGACACCATGGTCAGACATCTAAACGCTCACAAGAGGGCCAATCCCAAGGAGGTGTTTTCCATACTGAAGGAGATACGCGATCGGAGGAAGTTGGAGAATAGCTCGGAGTCCTTGGAAATATGCCAGCCGAACGAGGATAACGAGGAGACTCGGCGGAATGAAAGATCaccgagcgagagcgagagcagCGGCGCGACGAAGACTCTGAGAAGACGCAACGTCCGAGCGGAACAGAGGGACTCGGACGTGTTGAACAGCGACTCCAGCAACGATAATGTCGAGCCCCAAGACGATACGTTGCTGCACCACTGCAAGCATTGCGGCAAACGCTACTCCACCGAGCGATCCCTGCAACGTCACCTGCTGATACACGACGAGAAGAAGTTCGTTTGCAGCGTGTGCAATATGAAGTTCTACCGGCAGGACCGGCTAAAGAGTCACGTGGACCGGTACGGCCATGACGAGACGAAGGCGCGCGCGGAGCCGCAGAGACCGCCGGACGACAAGTCGGCTATCAAGCTCATCAACAGCTGGATCAGGGAGGAGCTGGACTCCGATAATGAGGGCAAGGGTTTCCCGTGCAAGATTTGCGGCAAGTCGTACGACACAAAAAAGTCCCTGTCGAAGCACCAAGCGAACACGCACGCCGGCCAGAACGATTGCTGCGCAAGCTGCGGTGACAGCGTCTGTGGTTGCGCCGAACGCGGCAAGAACGGCAGTCCAGAGAAGAGCGGCAACGAGGCCACCAAGTCGAAGCCGTATACGTGCGAGGAGTGCCACAAATCCTTCGAGAAGGAGATCAAGCTGCAGAGGCATCTGCGAATCCACGAGCGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGCTTCCTCTGTCACATCTGCAGCAAGACCTTCCGTCAGAACACCGGCCTGATGTTCCACATGCGCACGCACACCGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGCTTTACCTCCAATTCCAACTGCATCAACCACGAGAGAACGCATACCGGCGACCGGCCGTTTGTCTGCCACTTTTGCAGCGCTGCCTTCGCCAAGTCCTGCACCCTCAAGGCCCACATCACCACCCACACCGGCGAGGCGAACTACCACTGCAAGACCTGCGGCAAGTCGTTCCGCCGGCTCAAGTATCTGAAGGAGCACCGGTTCACGCACACCGGCGAGAAGCCGTACGCCTGTAAGATATGCGGCACTGCCTACAGCCACTCCGGCAGTCTGTTCGTGCACGAGAAGAAGTGCAAGGCGCAGTACAGCGGCTACCACCAGCAGCCGGGTGCCGTGGCAGCGGCGCAGAACACGCAGCAGTCCGCGACTGCCGCGTACAACAGTTCCCAGTCTTCGCAGGGTGCCGCGATCGCCGGCATCTCGGCCGCCTCCCCTCCCACGCTCGTCACCAGCCCCATCATCGGCGGCTTGCCGCAGGCCCATCTCAACGTTATCAACAGCACGCTGAGCGCGCAGATAGCCAAGGGTCACGCGGTGGACAACGTGCAGCGCATGAACGCGGTAGTCTCGTCCGGGTTACACGCGCACTCCAACGCCGGCGACATCGCCGAGATGAACTCCACCGTGCGGAACTTTGCCATCATTGGCCAGATGTTCCACTCATAA
Protein Sequence
MEVNSKMLTRASQQNTSLCRVCLIADHNNRCIFRENWDDPDSTSASELSTKLRLCGGVEVLEDDGLPTSICLECVTKVNVAYELREQCQKADMKLRKLYGKASRKSIAGNCISTKDQYCQTEQFYISDTIKSEDNTELSVDNVINIEKSIFTESKTVMRHEQIIDAFNEGYCAEDILVDNEPGLDCVNKFKEIGHEKVAKKETYRTRRMTMFKRVTSMENLKNHKERQRRYIKKSAMNVKRDSGDHEHQTKMRRNLHNRVDRTSEFDSYKCLECDRFYSSKKSLDRHTLTHNDKKFKCENCDKQFFCLDKLLKHVDLHKMKEKPQPVLCRICNKSFRKTDTMVRHLNAHKRANPKEVFSILKEIRDRRKLENSSESLEICQPNEDNEETRRNERSPSESESSGATKTLRRRNVRAEQRDSDVLNSDSSNDNVEPQDDTLLHHCKHCGKRYSTERSLQRHLLIHDEKKFVCSVCNMKFYRQDRLKSHVDRYGHDETKARAEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLSKHQANTHAGQNDCCASCGDSVCGCAERGKNGSPEKSGNEATKSKPYTCEECHKSFEKEIKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSGYHQQPGAVAAAQNTQQSATAAYNSSQSSQGAAIAGISAASPPTLVTSPIIGGLPQAHLNVINSTLSAQIAKGHAVDNVQRMNAVVSSGLHAHSNAGDIAEMNSTVRNFAIIGQMFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00769867;
90% Identity
-
80% Identity
-