Hsal008530.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpegnathos saltator
Gene Symbol
-
Assembly
GCA_003227715.1
Location
NW:991946-996575[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00013 0.008 16.0 3.1 1 23 267 289 267 289 0.99
2 12 0.45 29 4.9 3.3 1 23 294 316 294 316 0.93
3 12 0.00068 0.043 13.7 1.2 3 23 327 347 326 347 0.97
4 12 0.00036 0.023 14.6 8.2 1 23 438 460 438 460 0.96
5 12 0.00086 0.055 13.4 1.0 1 22 465 486 465 489 0.90
6 12 2.6e-06 0.00016 21.3 1.1 1 23 528 551 528 551 0.94
7 12 5.5e-06 0.00035 20.3 2.6 1 23 588 610 588 610 0.99
8 12 0.00014 0.0089 15.9 4.0 1 23 624 646 624 646 0.96
9 12 0.00013 0.0084 16.0 4.7 1 23 652 674 652 674 0.98
10 12 0.0012 0.075 13.0 3.2 1 23 680 702 680 702 0.98
11 12 4e-05 0.0025 17.6 6.5 1 23 708 730 708 730 0.98
12 12 0.00018 0.012 15.5 0.3 1 21 736 756 736 757 0.93

Sequence Information

Coding Sequence
ATGGAGGTTGACAGCGAGATGTTGACGCGACTGAGTCAGCAGGACACCAGTCTCTGCCGTGTCTGTCTGATCGCGGATCACAACAATCGATGCATCTTTCGCGAGAGCTGGGACGACCCGAACAGCCCGAGCGTCTCCGAACTGTCGACGAAGTTGCGCTTATGCGGCGGTGTGGAGGTGCTGGAGGACGATGGCTTGCCCACCAGCATCTGTCTCGAGTGTATGACGAAAGTCAACGTCGCCTACGAGCTGAGAGAGCAGTGTCAAAAGGCTGACATGAAGCTCAGGAAGCTCTATGGTAAAGCCTTGAGGAGGAGTGTCGCTGGTAACTGCATTTCTACAAAGGACCAGAGTTGTCAGACTGAACAATTTTATATCTCTCATACAATCAAATTGGAAGACGCAGAACCAAGCATGGGCAATGTAATTAATACAGAGAAGAGTCTCCTTGCGGCATCAAAGACTATCATGAAACATGAACAAATCATGGATGCATTTAATCAAATCAATTGTGCGGAGGACATACTGGTAGATAATGAACCAGATCCAGACTGTGTTAACAAATCTAAAGAAGTAGGATACGAGAAGATTGCTAAGAGAGAAGCTTACAGAACAAGAAGGTTGACCATGTTTAAGAGGGTCACGTCTATGGAGAATCTGAAGAATCacaaggagagacagagaagatACATCAAGAAAAGTGTGAGCGTGAAACGCGACGGTAGCGATTACGAGCATCAGACAAAGATCAGAAGGAACCTGCATGGTAGAGTGGACAGAACGTCTGAATTCGATTCGTATAAATGTTTGACATGTGATAGATTTTATTCCAGTAAGAAGTCCCTAGATAGACACACGTTGACTCATAACGACAAAAAGTTCAAATGCGAAAGCTGTGATAAACAATTTTTCTGCCTGGACAAGCTGCTCAAGCATGTGGATCTGCACAAAACGAAGGAAAAGCCGCAGCCGGTGCTGTGCCGAATCTGTAACAAGAGCTTCAGAAAGACCGACACCATGGTGAGACATCTGAACGCTCACAAGAGAGCCAATCCCAAGGAGGTGTTCTCCATACTCAAGGAGATACGCGATCGCAGGAAATTGGAGAACAGCCCGAAGTCCTCAGAAACGTGTCCGCCGAACGTGGACGAGGAAACAGCGCGGAATGAGAGATCgcagagcgagagcgagggcaGCACGACGAAGTCGCTGAGGAGACGCAGCGTCCGGACGGAGCAGAGAGACTCAGATGTGCTGAACAGTGACTCTAGCAACGACAGGCCCGAGTACCACGTGGACGAAACATTGTTGCACCATTGCAAACACTGCAACAAACGCTACTCCACCGAGAGATCCCTCCAACGTCACCTGTTGATACACGACGAGAAGAAATTCGTCTGCAGCGTGTGCAATATGAAGTTCTACCGGCAAGACCGACTGAAGAGTCACGTGGACCGATACGGCCACGACGAGACAAAAGCGCGCACGGAACCGCAGAGGCCGCCAGACGACAAGTCGGCCATCAAGCTGATCAACAGCTGGATTCGGGAGGAGCTGGACTCCGATAACGAAGGTAAAGGTTTCCCCTGCAAGATCTGCGGCAAATCGTACGACACGAAGAAGTCTTTGTCCAAGCACCAAGCGAACACACACGCCAGCCAGGAGGAATGCTGCCCGAGCTGCGGCGGTAACGTGTGCAGCTGCGCTGAGCGCTGCAAGGAGAACCCGGAGAAGAGCAACAACGACGGCAAGTCGAAGCCATACACGTGCGAGGAGTGCCACAAGTCCTTCGAGAAAGAGATCAAACTGCAGAAGCACCTGCGGATCCACGAGCGCGCCAAGGAGCAGCAGGACGTGAACTTCAAGCGATTCCTCTGCCACATCTGCAGCAAGACCTTCCGCCAGAACACCGGGCTAATGTTCCACATGCGCACGCATACCGGCTACAAGCCACACGTATGCAAGTACTGCGGCCGCGGTTTCACCTCCAACTCGAACTGCATCAACCACGAGAGGACGCACACCGGCGACCGGCCGTTCGTCTGCCACTTCTGCAGCGCCGCCTTCGCCAAGTCGTGCACGCTCAAGGCCCACATCACCACCCACACCGGCGAGGCCAACTATCACTGCAAGACCTGCGGCAAGTCCTTCCGCCGCCTCAAGTACCTCAAGGAGCACCGGTTCACGCACACTGGCGAGAAGCCGTACGCCTGCAAGATCTGCGGCACCGCCTACAGCCACTCCGGCAGCCTATTCGTGCACGAGAAGAAGTGCAAGGCGCAGTACAACAGCTATCATCACCAGCCGGCGCAGAACGTGCAGCAACCCCCGGCCGCACCCCCGTACAACAACAGTCCCCAGGCCTCGCAGAACGTCGTGCAGGTCGCCGGTATCTCGGTCGCGTCTTCCCCCACCGTCATCGCCCCCATCATCGGCGGCTTACCGCAGGCTCACCTCAACGTCATCAACAGCACGCTGAGCGCGCAGACCGGCAAGAGCTACGTGGCGGACAATGTCCAGCGGATGAACACCGCCACGGTCGTCTCGTCTGGTCTGCACGCGCACTCCAACGCCGGCGACATCGCCGAGATGAACTCGACCGTGCGGAACTTCGCCATCATCGGTCAGATGTTTCACTCGTAG
Protein Sequence
MEVDSEMLTRLSQQDTSLCRVCLIADHNNRCIFRESWDDPNSPSVSELSTKLRLCGGVEVLEDDGLPTSICLECMTKVNVAYELREQCQKADMKLRKLYGKALRRSVAGNCISTKDQSCQTEQFYISHTIKLEDAEPSMGNVINTEKSLLAASKTIMKHEQIMDAFNQINCAEDILVDNEPDPDCVNKSKEVGYEKIAKREAYRTRRLTMFKRVTSMENLKNHKERQRRYIKKSVSVKRDGSDYEHQTKIRRNLHGRVDRTSEFDSYKCLTCDRFYSSKKSLDRHTLTHNDKKFKCESCDKQFFCLDKLLKHVDLHKTKEKPQPVLCRICNKSFRKTDTMVRHLNAHKRANPKEVFSILKEIRDRRKLENSPKSSETCPPNVDEETARNERSQSESEGSTTKSLRRRSVRTEQRDSDVLNSDSSNDRPEYHVDETLLHHCKHCNKRYSTERSLQRHLLIHDEKKFVCSVCNMKFYRQDRLKSHVDRYGHDETKARTEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLSKHQANTHASQEECCPSCGGNVCSCAERCKENPEKSNNDGKSKPYTCEECHKSFEKEIKLQKHLRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYHHQPAQNVQQPPAAPPYNNSPQASQNVVQVAGISVASSPTVIAPIIGGLPQAHLNVINSTLSAQTGKSYVADNVQRMNTATVVSSGLHAHSNAGDIAEMNSTVRNFAIIGQMFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01087394;
90% Identity
-
80% Identity
-