Obru008587.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:1257985-1266308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.71 45 4.2 6.6 2 23 281 303 280 303 0.97 2 20 2.4 1.6e+02 2.5 2.8 1 23 353 375 353 375 0.91 3 20 0.13 8.3 6.5 1.2 1 23 424 446 424 446 0.98 4 20 0.013 0.81 9.6 0.3 1 21 500 520 500 521 0.93 5 20 0.0047 0.3 11.0 1.9 1 23 561 583 561 583 0.96 6 20 0.00046 0.03 14.2 2.3 1 23 626 648 626 648 0.97 7 20 0.00045 0.028 14.2 0.1 1 23 654 676 654 676 0.97 8 20 9.5e-06 0.00061 19.5 0.1 1 23 720 743 720 743 0.94 9 20 9.7e-05 0.0062 16.3 2.4 1 23 749 772 749 772 0.97 10 20 0.00022 0.014 15.2 3.6 1 23 779 802 779 802 0.97 11 20 0.0002 0.013 15.3 0.0 1 23 810 832 810 832 0.92 12 20 0.24 16 5.6 0.2 2 20 892 910 891 910 0.95 13 20 0.022 1.4 8.9 0.1 2 23 930 951 929 951 0.96 14 20 2e-05 0.0013 18.5 1.8 1 23 964 986 964 986 0.98 15 20 0.00036 0.023 14.5 1.4 1 23 1007 1030 1007 1030 0.93 16 20 0.0032 0.2 11.5 0.9 2 23 1088 1110 1087 1110 0.92 17 20 0.00035 0.022 14.6 0.7 1 23 1132 1155 1132 1155 0.93 18 20 0.00016 0.01 15.6 0.2 1 23 1163 1187 1163 1187 0.98 19 20 0.27 17 5.5 0.6 1 23 1192 1215 1192 1215 0.94 20 20 0.011 0.72 9.8 0.2 2 23 1244 1266 1244 1266 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGGGAACGTGGAGAACGTCTGCAGGTTGTGCCTGTCCACGGACGAGCCGAAGTCTTCGGTGTTCATAACGGACGAGCAGGAGGACCCCGCTGCGTCGTTGGCCATCAAGATCCGATCCTGCCTATCAATCGAGATTTTGACTACTGATAAGTTGTCCACATTGATCTGCACAAATTGCGTGCAAAATGTTAATCAATGGCATACCTACAAGGAATCCTGTCTACGTTCACAGGATAAACTACAGGAGTGGCTGACAAGTCAACAACAATCGAAACCAACGGTTATAACAATTAAGGATGAACCAGTGGACTTAGATTACGAAGACAATATAGAGATTATCTCAGAGTGCACCAACAACCAGGAGTTATCGAGTCTATCAGTTGATACAGTGGAGGGCAGCGAGACTAACAATGAGCAAGTAGAAGAAGTGTCAGAAGACATTGTTAACAATGACGAAAGTGATAAGACTAACGCGGATAAACAGATAGAATCAGAAACAATTCCATCTGTAGCAGAGAAAGAGGTTGATCAAGATGAGAGTCAAGTGGTGAAGGACCAACAAAATCCTCCACTTTCGCGTGTCATTAAAAGTGAACCGCGGGATGATTACGATACCGATTGTACTGTAGAATTAGACGATAACGTAGACGATAACGAGTTGTTGTTGAATCCCATGGCGCTCGGCACAAAGGAAGACGTGGTTATGGAAGCCGATTCCACCCAAAAGTTCAACAATACAGCTAGTGGCGCGACACAAAAGAAAAAGCTACGACGCGGCCCTCACACTCATTTCAGAGGCACGCGCGCTTTCAAGCAGAAGTGTGTATACtgtcaaatatttttgcattccAAACATTCATACATGAAGCACATGAAGCGATTTCACAGTAATAAAAACAACAGCGCCGAGAACTCGGAGTCTCAGAATGACGAGGAGGAGATGGTGGAGGATCTAGAGGACGAGCTGATCAGTATGGAGAAGGACTCGCCGTTGACGCAAGTTCAACAGGACATTATCAGCCAACTGAAGACGTTCTCTTGTTACTCGTGCCAACAAAGCTTCAACGATCGACGCAGCACGCTTTTTCATATCCGTCAACACCTGCCGGATTTACGACCGTACACGTGTATCGCTTGTCTGACTGAGTTCTCTGATCGGTCGATGTACCAGTCGCATTGCGGCGCATCCTTTGAATGCGCCATGAAGATCGCATTGGTTGTGCCGAAGCAGGGTAATGAACGGTACTTCACGTGCAACATGTGCTTGCGCTCTATGCGAGGTAGGAAAGAGCTGCTCAGCCATTTGTCCAAGCATTCCGATAAGCAGTACGAGGAGATGATGTCGCCGGCCCGACCGCCGCCCAAACTGAAGCCGATGGCACCGTTACCATCGCCGAAGAACGACGACGCCAACAAACCACCGCCGCAGAAAAACCTGAACGGACCATATAAGGACGGCGATCCCGCGCACAATCACACGTGCGATCTGTGCGGCATGATATACCGATACCGGCCCAACATGATCAAGCACAAGCAGCTCTGTATACGGCTGCAGCCGGAGGTGAGGACATCGTACAAGTGTGCGCACTGTTCCATGACGTTCCTTGTGTTCAAGAAGTTCCACACTCACGTCACGATCGGCCACAAGAAGAAGGACTTCACCTGCGCCGTGTGTAACTCCCGATTTAGGTCGCCGAGTGATTATCTCACCCACCACGAACAGCATCGCGCGTCGCACGGCAGTCGGCCGGTGCAGCAAAACAGCGGCAAGACTTCGCAGAATGCTCAGTTGCCGTTGAAAGAACGCAACGCCCACGGAGCGGACGCTAAGACTAAGGCCAGCGATGAGAAGTATACTTGCTCTCTTTGCAACTTGGGTTTCTCGACGCGGACCGAGCTGACGGAACACCGGCATCTACATCTCAAGGTGAAGATATACTCGTGCGCCATTTGTCGTAGTATGTTCAGCAGCGCTGGCGCCTTGGAGATCCATATGAAGGACCACGGTATAGAAGATCCGAACGAGCAGAACGCAAACATCTCCTGCGTGGAATACGGCAGTTTGGACGAGGACGTGAGGATCGATAATGACTCGATAAACGCTAGCGCTGTCTCGGATCCCGGCACACAGCGCTACGAGTGTAATCAGTGTGGCAAGGTGCTGTCCAATTACGCCAATCTCAGACGGCACGCCACGATCGCGCACCGGAACACCAAGCATTACCAATGCACCGAGTGCTCGGAAACGTTCACTCGTAAGGAAGTATACGAGCAGCACATGCAGCACGAGCACAAGACCTCCAAGACCATGTTTCATTGTCCTCAGTGTCCCAAGAGCTTTGTCTTCCAGACGAATTTCAGTTATCACTTTAGAACCGCGCATCTCGAGAAGTCGCAGGACGGTTACGCGTGCGACATTTGCGGCAAGGTCTTCGTCGAGGAGGCTTCCTTAAAGATACACAAGGGCTGGCACAATCGCGCCAATTCTCGCCTCAGCACTCGATTCATTCTGGCGAATCAAAAGAACCCCAACGACTTGCAGAAGGATACAAGCGTCACTGAGACGAACTCACCGGAACGCCCAGCAAGAGCTCGAAAGTCCTTCCCCAACCCTTCGTCGCATTCGTCGTCGAAGTCGCAAGGTAACTTGCAGTGCCAAGTGTGCAACGACAAATTCAATGACGTGACCGAGTTGAGGACACATCTGTGGGATATACATTGCGCTAAAAACAAACCAGAGAAGAGTATATCCAACGATGAGCTTCAATGCGAGCTGTGCACGAATGTCTTCCCCGACAAAACAATCCTGGCCGCTCACATGAAGTGGCACAAGGCCAATCCCATTCTCAGCGACGTACACAAAACCTATACTTGTGACGTGTGCAACAAATCCTACAGTTCGAAGAAGGTCCTGTGGAAGCACAAGAGACTTCACAAGGCCACTTTTGTGACTTCCATGAAGTTCCAATCGTTGGCCAAGAAGCCGGCGAGTCAGTTCCTGTGCACAATTTGTCGAAAGGTCTTTTCAAGCGGTCAGTCTCTACAGCGACACAGACTCAACTTCCACAGCGACCTACAGAATCAGCATCAACGTACGCAGCAGCTGAACAACAGCAACCGGAGATTATCGCTCGAGGAGGAACCGAAGTTGAAGCGTATGAAAATGGAAATAGACGACAACCCGCCCAAGTTACCGCCTTTCGCCATGGATTTCGCTGGCGAGAGGAAGAAGTCGGTCATGTGCCACGTGTGCAAGAAAATGTTCGCCAACATGAGCGTGTTGTACAAGCACAAGCAGGCCGTGCATAAACCGCAAACGGGGAAGGATGGCTTGCCCGAGTGCAGGCCGGTGTCGACGCAGGACGGCAAGTTCTCATGCAACGTCTGCTCTAAGGAGTTCCCTGGCCTGTCGAATCTGCGACAGCATTTCACGATCAAGCACAAGAAGGGCTACGACCAGCAGTACCAGTGCAACGTGTCTAGCTGCGACCTGGTGTTCCCCACGTCCGATTCGCTGAAGGACCATGAGCAGACGCACACCAACATGATGTTTAGCTGCAGACTGTGCGATCGTTATCTCTTCAACAAAGAGTACATGATGGATCACATTATCAATGTGCACAACACTGCATACCAGGCCGACAGCAAGACGTTTCACCGGGAGATCGATCTCAATACCTACGTGGTGAAGGGCGCAACCGGGGCTACGTGTCCGCGATGCAACGTCAAATATCCCAACAACCGGGCCCTGAAGATACATTACGTGAAGGTCCACGAGAATACCGAGTAA
- Protein Sequence
- MDEDVVEIGNVENVCRLCLSTDEPKSSVFITDEQEDPAASLAIKIRSCLSIEILTTDKLSTLICTNCVQNVNQWHTYKESCLRSQDKLQEWLTSQQQSKPTVITIKDEPVDLDYEDNIEIISECTNNQELSSLSVDTVEGSETNNEQVEEVSEDIVNNDESDKTNADKQIESETIPSVAEKEVDQDESQVVKDQQNPPLSRVIKSEPRDDYDTDCTVELDDNVDDNELLLNPMALGTKEDVVMEADSTQKFNNTASGATQKKKLRRGPHTHFRGTRAFKQKCVYCQIFLHSKHSYMKHMKRFHSNKNNSAENSESQNDEEEMVEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCQQSFNDRRSTLFHIRQHLPDLRPYTCIACLTEFSDRSMYQSHCGASFECAMKIALVVPKQGNERYFTCNMCLRSMRGRKELLSHLSKHSDKQYEEMMSPARPPPKLKPMAPLPSPKNDDANKPPPQKNLNGPYKDGDPAHNHTCDLCGMIYRYRPNMIKHKQLCIRLQPEVRTSYKCAHCSMTFLVFKKFHTHVTIGHKKKDFTCAVCNSRFRSPSDYLTHHEQHRASHGSRPVQQNSGKTSQNAQLPLKERNAHGADAKTKASDEKYTCSLCNLGFSTRTELTEHRHLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNEQNANISCVEYGSLDEDVRIDNDSINASAVSDPGTQRYECNQCGKVLSNYANLRRHATIAHRNTKHYQCTECSETFTRKEVYEQHMQHEHKTSKTMFHCPQCPKSFVFQTNFSYHFRTAHLEKSQDGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILANQKNPNDLQKDTSVTETNSPERPARARKSFPNPSSHSSSKSQGNLQCQVCNDKFNDVTELRTHLWDIHCAKNKPEKSISNDELQCELCTNVFPDKTILAAHMKWHKANPILSDVHKTYTCDVCNKSYSSKKVLWKHKRLHKATFVTSMKFQSLAKKPASQFLCTICRKVFSSGQSLQRHRLNFHSDLQNQHQRTQQLNNSNRRLSLEEEPKLKRMKMEIDDNPPKLPPFAMDFAGERKKSVMCHVCKKMFANMSVLYKHKQAVHKPQTGKDGLPECRPVSTQDGKFSCNVCSKEFPGLSNLRQHFTIKHKKGYDQQYQCNVSSCDLVFPTSDSLKDHEQTHTNMMFSCRLCDRYLFNKEYMMDHIINVHNTAYQADSKTFHREIDLNTYVVKGATGATCPRCNVKYPNNRALKIHYVKVHENTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769843;
- 90% Identity
- -
- 80% Identity
- -