Hsal003402.1
Basic Information
- Insect
- Harpegnathos saltator
- Gene Symbol
- -
- Assembly
- GCA_003227715.1
- Location
- NW:2355131-2360313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.4 92 3.3 5.0 2 23 286 308 285 308 0.96 2 20 0.034 2.2 8.4 2.7 1 23 360 382 360 382 0.97 3 20 0.95 60 3.8 1.1 1 23 431 453 431 453 0.97 4 20 0.0082 0.53 10.3 0.3 1 21 507 527 507 528 0.94 5 20 0.0029 0.18 11.8 2.3 1 23 568 590 568 590 0.98 6 20 0.00042 0.027 14.4 0.2 1 23 644 666 644 666 0.97 7 20 0.00047 0.03 14.2 0.1 1 23 672 694 672 694 0.97 8 20 1.5e-05 0.00096 18.9 0.1 1 23 740 763 740 763 0.94 9 20 2.1e-05 0.0013 18.5 2.1 1 23 769 792 769 792 0.96 10 20 1.2e-05 0.00075 19.3 3.2 1 23 799 822 799 822 0.97 11 20 0.00021 0.014 15.3 0.0 1 23 830 852 830 852 0.92 12 20 0.063 4 7.5 0.3 1 20 909 928 909 928 0.97 13 20 0.012 0.8 9.7 0.0 2 23 948 969 947 969 0.96 14 20 2.6e-05 0.0016 18.2 1.9 1 23 982 1004 982 1004 0.98 15 20 0.00051 0.032 14.1 1.1 1 23 1025 1048 1025 1048 0.93 16 20 0.16 10 6.3 1.0 2 23 1105 1127 1104 1127 0.92 17 20 0.00012 0.0079 16.0 0.7 1 23 1149 1172 1149 1172 0.93 18 20 0.00042 0.027 14.4 0.1 1 23 1179 1203 1179 1203 0.97 19 20 0.008 0.51 10.3 0.5 1 23 1208 1231 1208 1231 0.96 20 20 0.093 5.9 7.0 1.0 2 23 1260 1282 1259 1282 0.93
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATTGAGAACGTGGAGAGCGTCTGCAGGCTATGCCTGTCCACGGATGAGCCGAGGTCTTCGGTGTTCGCCGCGATGGATGAGCAGCGGGACACGGCCGTGTCATTGGCCATGAAGATCCAAGCTTGCCTGTCAATCGAGATTTCGACTACCGACAAGCTGTCCAAGCTGATATGCGCGAATTGCGTGAAAAATGTAAACCAGTGGCACACTTACAAAGAATCCTGTCTACGTTCGCAGAATAAGTTGCAGGAGTGGCTGACAAGTCAGTCGCAACCGAAACCTGTGGTTGTAACAATCAAAGATGAACCAGTGGACTTGGACTGTGAAGACAATATAGAGATTGTCTCAGAATCTATCAACAACCAGGAATCATCGaATTTACAAATTCTTACGGTGGAGGACAGTGAGAGCAGCAATGAGCATGTACAAGATTTGTCAGACAACATCAACGACAGTGACGATGCTGATGTGAATAATGCGGATAGGCAGACTGAATCCGAAACGGTTCCTGCACCTGCAGCAGAAAAAGAGACTGACAAAGATGAGAGTCAAACGGAGGATCAGCAGCAAGATTCGCAGCCTTTACGTGCCGCGATTAAAAGCGAGCCGCAAGACGATTACGACGACGCCGATTACGACGGCACCTTAGAGGTAGAATCCGTCGACGACAACGGGATATTATTGAACCCCATGGCGCTTAACGCAAAGGAAGATGTAATCATGGAGGCTGATTCCACCCAAAAGTCCAACAATGCAGCAAGCGGGCCGACGCATAAGAAAAAACTAAGGCGCGGGCCTCACACTCATTTCAGAGGCACGCGCGCTTTCAAGCAGAAGTGCGTATACTGCCAGATATTTTTGCATTCCAAGCATTCGTATGTGAAGCACATGGAGCGATTTCACAGCAACGGTACCAAGGACAACGGCACCGAGAACTCGGGATCTCAGAATGACGAGGAAGAGATGGTGGAGGACTTGGAGGACGAATTGGTCAGCATGGAAAAAGATTCGCCGTTGACGCAGGTTCAACAGGATATCATCAGCCAGCTGAAAACCTTCTCCTGTTACTCGTGCCAGCAGACTTTCAACGACCGGCGCAGCACGCTCTCACATATCCGCCAACATCTGCCGGACCTGCGACCGTACACGTGCATCGCTTGCTTGACCGAGTTCCCCGATCGGTCGATGTATCAGTCGCACTGCGGCGCTTCCTTCGAGTGCGCTATGAAGATCGCACTGGTCGTGCCGAAGCAGGGTCACGAGCGTTACTTCACGTGCAATATGTGTCTGCGCTCGATGCAGGGCAGGAAAGAGCTGCTCAGCCACTTGTCCAAGCATTCCGACAAGCAGTACGAGGAGATGATGTCGCCGGCGCGACCGCCGCCTAAGTTGAAGCCGATggcgccgttaccgtcgtcgAACGGCAATGACGCCAGCAAGTCACCGTCGCCAAAAACCCCGAACGGGCCGTACAAGGACGGCGATCCCGCGCACAATCACACGTGCGACCTTTGTGGCATGATATACCGCTACCGGCCCAACATGATTAAGCACAGGCAGCTGTGTTCGCGGCTGCAGCCGGAGGTCAGAACGTCGTACAAGTGCGCCCACTGTTCCATGACGTTCCTCGTGTTCAAAAAGTTCCACTCTCACGTCACGGTTGGCCACAAGAAGAAGGACTTCACCTGCGCGGTGTGTAACTCGAGATTCAGGTCGCCCAGCGACTACCTCACTCACCACGAGAAGCATCGCGCGTCACAGGTGAGCCGACAGACGAATCAGCAGATCAGCGGCAAGATCTCGCAGAGTGCTCAGTCACCGTTGAAGGAGCGCAACGCAGCCGCTCAGTATCAGCCGGAAGATATGCGCACCGATCAGACGAAGACGAGGACCAGCGATCAGAACAAGTACGTCTGCGCTCTCTGCAGCATGAGCTTCGCCACGCGAGTCGAGCTGACCGACCACCGGAACCTGCACCTCAAGGTGAAGATATATTCGTGCGCCATTTGCCGCAGCATGTTCAGCAGTGCCGGCGCCTTGGAGATTCACATGAAGGATCACGGCATCGACGATCCCAACGAGCGGCAGGCTAACATCTCCTGCGTGGAGTACGGCAGCCTGGACGAAGACGTGAGGATCGACAATGACGACGCAGCGATGAACGCCAGCGCTGTCTCGGATCCTGGCACGCAGAGATACGAGTGCGATCAGTGCGGCAAGGTGCTGTCTAATTACGCCAATCTGAGACGgcacgcgacgatcgcgcacCGGAACGCCAAGAATTACGAGTGCGCCAACTGCGAGAAGTCGTTCACGCGCAAGGAATTGTACGAGCAGCACATGCAGCACGAGCACAAGTCCTCCAAGAATATGTTCCATTGCCCGCTGTGTCCCAAGAGCTTCGTCTTCCGGTCCAATTTCAACTATCACTACCGGACCGCGCACCTCGAGAAGTCGCAGAACGGCTACGCCTGCGACATTTGCGGCAAGGTCTTCGTCGAGGAGGCGTCATTGAAGATACACAAGGGCTGGCACAATCGCGCCAACTCCCGCCTCAGCACTCGTTTCATCCTGGCCAATCAAAAGTTTGCCAACAACACGCTGGACAATTCAAGCGTCGGCAACAGTGCGGAACGCCCGGCGAGAGCTCGCAAGTCCTTCCCCAATCCTCCGTCGCACTCGGCGATCAAGTCGCCGGGCAACTTCCAGTGTCAAGTGTGTAACGACAAATTCAATGACGTGACCGAGTTGAGGACTCACCTGTGGGACGTACATTGCGCCAAAAACAAGCCGGAGAAGAGTATAGCCACCGATGAGCTTCAGTGCGAACTGTGCACGAACGTCTTCCCCGACAAGGACATTCTGGCCGCTCATATGAAGTGGCACAAGGCCAATCCCATCCTCAGCGACGTACACAAGACGTACACCTGCGACGTGTGCAACAAGACCTACAGCTCGAAGAAGGTTCTGTGGAAGCACAAGAGGCTGCACAAGGCCACCTTGCTGACCTCCGTCAAGTTCCAGTCGTTGAACAAAAAGCCGGCCACCCAATACCTGTGCTCCATCTGCCGGAAGGCTTTTTCGAGCGGCCAGTCTCTACAGCGACACAGACTCAACTTCCACAGCGAGCTGCAGAGCGTGCAGCAACGTACGCAACAACAGCTGCACAACCGGCGACTCTCGCTGGAGGACGAGCCGAAGATGAAGCGTATGAAGGTCGAAGCGGAGGACAATCCGCCCAAGTTGCCGCCCTTCGCCATGGACTTTGccggcgagaggaagaagtCTGTCATGTGCCACTTGTGCAAGAGACTGTTCCCCAACATGAGCGTGCTGTACAAGCATAAGCAGGCCGTGCACAAGCCGCGCATTGGGAAGGACGGCCTGCCGGAGTGCTTGCCGGTGCCGACGCAGGACGGCAAGTTCTCGTGCAACGTCTGCTCCAAGGTGTTCCCCGGCCTGTCGAACTTGCGCCAACATTTTACGATCAAGCACAAGAAGGTCTACGAGTCCTACCAGTGTAACGTGTCCAGCTGCGACCTGGTGTTCCCCACGTCGGACTCGCTCAAGGACCACGAGCAGATACACACCAACATGATGTTCAGCTGCCGGCTGTGCGACCGTTTTCTCTTCAACAAGGAGTCCCTGATGGATCATATCATTAGCGTGCACAACACCACATACCAGGCCGACAGCAAGACGTTCCACCGGGAGATCGATCTCAACACCTACGTGGTGAAGGGCGCGACCGGGACCACGTGTCCGCGCTGCCACGTCAAGTACCCCAACAACCGGGCCATGAAGATACACTACGTGAAGATCCACGAGAACGCCGAGTAG
- Protein Sequence
- MDEDVVEIENVESVCRLCLSTDEPRSSVFAAMDEQRDTAVSLAMKIQACLSIEISTTDKLSKLICANCVKNVNQWHTYKESCLRSQNKLQEWLTSQSQPKPVVVTIKDEPVDLDCEDNIEIVSESINNQESSNLQILTVEDSESSNEHVQDLSDNINDSDDADVNNADRQTESETVPAPAAEKETDKDESQTEDQQQDSQPLRAAIKSEPQDDYDDADYDGTLEVESVDDNGILLNPMALNAKEDVIMEADSTQKSNNAASGPTHKKKLRRGPHTHFRGTRAFKQKCVYCQIFLHSKHSYVKHMERFHSNGTKDNGTENSGSQNDEEEMVEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCQQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQSHCGASFECAMKIALVVPKQGHERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSPARPPPKLKPMAPLPSSNGNDASKSPSPKTPNGPYKDGDPAHNHTCDLCGMIYRYRPNMIKHRQLCSRLQPEVRTSYKCAHCSMTFLVFKKFHSHVTVGHKKKDFTCAVCNSRFRSPSDYLTHHEKHRASQVSRQTNQQISGKISQSAQSPLKERNAAAQYQPEDMRTDQTKTRTSDQNKYVCALCSMSFATRVELTDHRNLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIDDPNERQANISCVEYGSLDEDVRIDNDDAAMNASAVSDPGTQRYECDQCGKVLSNYANLRRHATIAHRNAKNYECANCEKSFTRKELYEQHMQHEHKSSKNMFHCPLCPKSFVFRSNFNYHYRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILANQKFANNTLDNSSVGNSAERPARARKSFPNPPSHSAIKSPGNFQCQVCNDKFNDVTELRTHLWDVHCAKNKPEKSIATDELQCELCTNVFPDKDILAAHMKWHKANPILSDVHKTYTCDVCNKTYSSKKVLWKHKRLHKATLLTSVKFQSLNKKPATQYLCSICRKAFSSGQSLQRHRLNFHSELQSVQQRTQQQLHNRRLSLEDEPKMKRMKVEAEDNPPKLPPFAMDFAGERKKSVMCHLCKRLFPNMSVLYKHKQAVHKPRIGKDGLPECLPVPTQDGKFSCNVCSKVFPGLSNLRQHFTIKHKKVYESYQCNVSSCDLVFPTSDSLKDHEQIHTNMMFSCRLCDRFLFNKESLMDHIISVHNTTYQADSKTFHREIDLNTYVVKGATGTTCPRCHVKYPNNRAMKIHYVKIHENAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087384;
- 90% Identity
- -
- 80% Identity
- -